G38413


Basic Information

Item Value
gene id G38413
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000005
NCBI id null
chromosome length 7630583
location 4191510 ~ 4194985 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU43540
AAACTTAAGTATTTTGGCATCGACATTTCTAGCTTCACTGTTAATTAATAACATTTTAGAATATTTTGCATGCCAAATTGAAGCCATGTGGTGAACATAATATTTGTAAAATAAATAAAGAAACATGAATTCGAGGTATAAGGAAAATATGTCATTAAATTAAAAACTTTTCTTTAAAATAGTTTAACAACTTTTCCAAAACCAACATTAATGCAAAGTACATTTCTAATAATCTGGCAAATGCGCTTTAAAGTAGTTTTTTTTTTCTTCTTTTCTTATGTCATTGACTCATATCACAGGTGTCATAAGAGGAAATCAGCTCTGCTTTCTATACATGCACAGATCTTTCAAGTGTTGCTTTTCTGTCGTCATTACCAAAACCACATTTTACATTGTCAAATACCACATTTAGATCTTCCAAGAACCAAACGGTTTCTGCACGTCATACTGAAGACTTTGAAAGAGTGGGCTTAATCTGTGCTGTAGCTATGTCTGACGCAGAGACGGAGGTGACAGGCGGATGAGCAGAAGGTCTACGCGTGGCTGATAGTGCGGTCTGTGTCAGGCGGATGTACTTGTGGTGCAAAACTATACTAGATCTGGTTTTATACACACTTAGTGCACTTTTGGGCATGAAACCTTCACCTTTGGCATTAGAAAAGCAGTTTCAGGGAAATCAAAGCCAGTCAAAAAAAAAAAAAAAAAGGGGGGTGGGCAAAACTATGTTTCATCTGATAACTCAATTGAGTATCATAAATTAAATATAGATGATGTGGTTTGATAACAAGTAGCTTATTTAAACACTTAATATTCAACAATATTATTTATCTGACTGCACTGACACTATTGGATGTGAACTGAGCTGAGCTGGATTTCTCCAGTACTGCTTTATAGATGAAATTAACTAATTTAATAACTGATGATCTTTACAATGGAACTGAATCAACACTCAGCAATGACACTATTTTCTTTTAGAGCTGCTGTACAGCCGAAATCAACTCTGTTTGCATCATTGAATCATGTTCCTGTTATCACTGTAAATCTGCTTTGAACCAATCTGTGTTGTATAAAGAGTTATAGAAGTAAAGGTGACTTTACTTAAAGATGATTTGGACTGATGTACAGGGAAAAGAGCAAAAGAGAACTAGAAAACCTTAGGGCTGGATGGGGTTTTTTGCTGAAATAATGTAGGACATTGCACGCACACACACACACACATACCCACACACACATACCCACACACACACACTGCAGTTCAGCAGCAGTCACATCCAACGTTTCAAACTGCAGCGCAATGTCAATATACACTGCAATTTCATAACAGGTACAATATAATATTTTCCATCATATACACCTGCAGAAAAGTCTGACACTTTTCTCGATGTCACTCACTGGCCTGGTACTTTCTATCGCATCCCTGCCAGACACTGCGACATCACCACGGTAACTCGGAGTAGGACAAATTGAGTGCTCAATCCTCCTCCGAGTGTAACCAAGCAACAGAATCAAGTTATATAATCAGCACTGCATTTCATTGATCAGCTGTTATATGACTGGACATTCAGGCAGCTTCTCTCTCAAAGTCCCACACTGTTGCATTAAAACGAGATGCGCCACGATCAGGAAACAATGTTTTAAATAATAACTGGGATATTTATGTTATTTTAAATGTATATATCTTTGTTATTGTGAGTTTTGCAGGTTGTATTTCTGAGATTATTTATGTATTTATTTATGTTTATGAATATATACATATTTTATAAAAATAAAGTTCAACTTCAGCCATTTTAACTGTTAATTACATTATGTAAAGTTAATAAAATACTAAACAAGTTAATAACATGATTAGATTTTTTATAAATCTGATCATATTAAACATCAAAAAATCAAAAATTAAGTATTCAACAATATTTATTTTAATGCAAGTCTTAAAATACTAAAACAAAAATCTATCCAACAGGAAAGGCCTTGTAACATTTTATTACACAAATAGTTTGCTCCAGCACACATGCGAGTGCTTCATAGGGAGCAATAAAGGAAGGTCATGTGATGTCATTCTCTCTGTTAGAGCACATTCAATCCATTATGCAATTAAACCTGTCCCCTGTAGCCATCTGAAAGTCCCCTTTACCTCCAGCAACTCATTTGACACGTCTGACAGACCGACACACACTACATCAACAGATCTGAACACTCACACACAACCCGAGTGAACCCTTCAGAAACACAAGAAATTATTTCCTGCTGCCACTTGCACCTCTGGCACTGACTGTAATCTGACCAAATAATCTGCACTGACAACCACCGAGCACCAAAACCAGTGAACACCAAGATCACACAGCCCACACTGCTGCTCTATTCATGTTATTCTGCCAGATTGTCTGTTTTTCTATACAATAGCTGTTCAATCATGACATCAATTTATAGGGCAACCCAGCTATTGATTCCCTCGTGAACTTCCTGTGGGTTTTTAAGAATTGTTCTTTTTGATTTCTTAGTAAATGAAGGTTTGCGGTTAATATTGCTTTCATGTTTTGTTCTACAATATAAATTATCAACAGTAATCTGTAGTCACTGTTTTTTGTAAAAAGTAAGTTGCTAACAAGTTGCTGTTTAAAGCTGCAGTCCGTAAGTTTTGCCTCTTTGTCGCCATCACTGTTCGAAACCTGCAATTGCAGTTATTTGCAGAATTATCATCTTTACGTGGGTTGTGCATCAGCACGGCTCCTCAGCGCGGATGAATCTAATGTTTGCTGTCAGTCACCACATCGGTGTGGATACTGTACTTCAGAATCACAGATTCTACGTCTTGGAAGTATGACCAAAATAAGAATTTTCACCAGAAAATGTCATCTGAACAAGTAAGTAACATGTCTGCCACTTTTGTTCTGATCAACTGAGAAAAAAAGCATTACACTAAATCACGCTGGTGATTAAATCTAACGATCGCTTAGCTCGGATCATGCCAAACCGTGCAAGTGATTACTATTGTTATACTTTGTTCTCAAATTGTTCATGTTGACAACATCAGCATTGCGTGTTTATGTGTATTTAGTGTGTATTAGCATTACCTGTACATTTCAATTAGCCACTCCGGAATCTGAAGTCTTTTGCTTTTGACTACAGGTTGTCACTAATGACTGTCATTTGGACCTTTCTGGATTACAATCCGCCATCAAAATGATAAGTTTAATTATTGCAGCTGCTGTGAGAAAAGGCTATAAATGATCCTCCACCTGCAGCATCCTCACATGATAAAGCCTACTAGCTGCTGGGACTCGTTCTTTATGTAAACAGACGTGACGTAATGACGCAAAGAAAAACGGCAGCATGCTCGAATTTCCCGCTGAAACCTACCAGTACCACCCGAATTCTAAAACATTATTACAAGCTTACCGTTGTGAATCGGGCTAAGGTAAGAATATAGTTTTGAACACTGGCTGGTTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU43540 True 3447 lncRNA 0.37 2 4191510 4194985

Neighbor

gene id symbol gene type direction distance location
CI01000005_04161239_04162612 NA coding downstream 28264 4160972 ~ 4163246 (-)
CI01000005_03986570_03989555 PRPH2B coding downstream 201955 3986099 ~ 3989555 (-)
CI01000005_03714714_03715575 NA coding downstream 475869 3714273 ~ 3715641 (-)
CI01000005_03530548_03573901 NA coding downstream 616729 3530249 ~ 3574781 (-)
CI01000005_03494256_03497235 QKI coding downstream 692493 3494077 ~ 3499017 (-)
CI01000005_04296779_04299727 NA coding upstream 101653 4296209 ~ 4299810 (-)
CI01000005_04332499_04357527 XPO5 coding upstream 137505 4332490 ~ 4358857 (-)
CI01000005_04401277_04428207 NA coding upstream 206263 4401248 ~ 4428207 (-)
CI01000005_04443111_04445092 NA coding upstream 248068 4443053 ~ 4445092 (-)
CI01000005_04624198_04638644 NA coding upstream 429011 4623996 ~ 4638644 (-)
G38411 NA non-coding downstream 805 4190451 ~ 4190705 (-)
G38490 NA non-coding downstream 55068 4136236 ~ 4136442 (-)
G38489 NA non-coding downstream 55532 4135670 ~ 4135978 (-)
G38488 NA non-coding downstream 56769 4134439 ~ 4134741 (-)
G38477 NA non-coding downstream 80412 4110784 ~ 4111098 (-)
G38509 NA non-coding upstream 8874 4203859 ~ 4204130 (-)
G38508 NA non-coding upstream 9262 4204247 ~ 4204615 (-)
G38511 NA non-coding upstream 11334 4206319 ~ 4209120 (-)
G38421 NA non-coding upstream 14163 4209148 ~ 4215199 (-)
G38512 NA non-coding upstream 20287 4215272 ~ 4215538 (-)
CI01000005_01883894_01899867 NA other downstream 2302234 1883222 ~ 1899867 (-)
G36628 NA other downstream 2527231 1663267 ~ 1664279 (-)
G36049 NA other downstream 3147838 1021295 ~ 1043672 (-)
G38510 NA other upstream 9860 4204845 ~ 4206208 (-)
G38415 NA other upstream 186253 4381238 ~ 4401110 (-)
G39515 NA other upstream 1638807 5833792 ~ 5834539 (-)
CI01000005_06481721_06483251 NA other upstream 2285704 6481355 ~ 6483265 (-)
G40487 NA other upstream 3000810 7195795 ~ 7196428 (-)

Expression


Co-expression Network