G38415


Basic Information

Item Value
gene id G38415
gene name NA
gene type unknown
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000005
NCBI id null
chromosome length 7630583
location 4381238 ~ 4401110 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU43542
AAGGCTTGGCAGAGCAGATCATTGGTTCTGCCTTCATCCATCTAGACAGTGTTCCAGACCACAGGCTTCGTCCCCTAGTCCGTCTGTTCATGAAGCAGCTGGTCATGTCCTGTCCTCATGAGTACTATGACAGCCTCCTTTGTCCTTTGCTGGGTCCATTATTTACCTATCTACAGCAGAGACTGAGCTTTCGGTGGCAGATCATCAACCAAAGGATCAGTCTGTGTGCTCAGGAGGAGGAGGAGGCCTATGAGGAGAACCATGTGACTCAGGAAATGGTGGAGGAGCAGCTGTTGCAGTTGGTCACACGAGAGGTTATTGACCTTCTAAGTGTGACTTGCATTACAAGAAAATGTCCAAAGCTATCTGCAAACAAAGAGGACACAGATGGAGATAAGAGGATGGTGTTAAAGGATTCCTCAAAGGGGATTCATGAGCTCTCAGAATTGGGCAAGTGCCTTCTCCGTAGTGAGGATATTTATATGAACCTCCTGACTATATGTTTTAACTCCCTTTCCTGGAAGGACACTGTACACTGTGAATGGACTGCTGGTGTGCTCTGCTGGACTTTGCTAAAACAGGTGCTTGGTGGTAACCTGCTCCCGGAGGCTGTGACGTGGATCTACACCAGTGTACTGAAGGGTCTGCAGATGCATGGGCAACACGAAGGCTGCAATGCTGCGCTAACTCAGCTGGCCTTTCTCATCTACGAGTCTCTAAGGCCTCGATATGCTGAGCTGCGTTTCATCATGAATCAGATCCCTGATATCCAAGTTGATGCCCTGGAGCAGTTTGATCAGAAGGCCATCCAACC

Function

NR:

description
PREDICTED: heterogeneous nuclear ribonucleoprotein U-like protein 1 isoform X1

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU43542 True 814 TUCP 0.55 9 4381238 4401110

Neighbor

gene id symbol gene type direction distance location
CI01000005_04332499_04357527 XPO5 coding downstream 22381 4332490 ~ 4358857 (-)
CI01000005_04296779_04299727 NA coding downstream 81453 4296209 ~ 4299810 (-)
CI01000005_04161239_04162612 NA coding downstream 217992 4160972 ~ 4163246 (-)
CI01000005_03986570_03989555 PRPH2B coding downstream 391683 3986099 ~ 3989555 (-)
CI01000005_03714714_03715575 NA coding downstream 665597 3714273 ~ 3715641 (-)
CI01000005_04401277_04428207 NA coding upstream 138 4401248 ~ 4428207 (-)
CI01000005_04443111_04445092 NA coding upstream 41943 4443053 ~ 4445092 (-)
CI01000005_04624198_04638644 NA coding upstream 222886 4623996 ~ 4638644 (-)
CI01000005_04731666_04732248 LHB coding upstream 330478 4731588 ~ 4732248 (-)
CI01000005_04738995_04739378 NA coding upstream 337509 4738619 ~ 4739378 (-)
G38537 NA non-coding downstream 13231 4366516 ~ 4368007 (-)
G38530 NA non-coding downstream 72064 4308961 ~ 4309174 (-)
G38517 NA non-coding downstream 152673 4226726 ~ 4228565 (-)
G38512 NA non-coding downstream 165700 4215272 ~ 4215538 (-)
G38719 NA non-coding upstream 140792 4541902 ~ 4542173 (-)
G38721 NA non-coding upstream 142227 4543337 ~ 4543809 (-)
G38724 NA non-coding upstream 146686 4547796 ~ 4548225 (-)
G38725 NA non-coding upstream 147491 4548601 ~ 4548844 (-)
G38729 NA non-coding upstream 150655 4551765 ~ 4552030 (-)
G38510 NA other downstream 175030 4204845 ~ 4206208 (-)
CI01000005_01883894_01899867 NA other downstream 2491962 1883222 ~ 1899867 (-)
G36628 NA other downstream 2716959 1663267 ~ 1664279 (-)
G36049 NA other downstream 3337566 1021295 ~ 1043672 (-)
G39515 NA other upstream 1432682 5833792 ~ 5834539 (-)
CI01000005_06481721_06483251 NA other upstream 2079579 6481355 ~ 6483265 (-)
G40487 NA other upstream 2794685 7195795 ~ 7196428 (-)
G40540 NA other upstream 3125111 7526221 ~ 7532148 (-)

Expression


Co-expression Network