CI01000006_00143205_00144149


Basic Information

Item Value
gene id CI01000006_00143205_00144149
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 142765 ~ 144542 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000006_00143205_00144149.mRNA
GTATTAAAAGGCAAGGGCAGATCAAGGTTCATTCAAAGATCAAGTATTTATATTTGATACTGAAAATTAATAGTGCTGACTACTACTTGATATCTAGCTTGTCATCTGTGAAGCAATAACTCAATCTTGTTGAATTGTGGAAAACATCTGAAGTAAGTATTTTTGTTTTGTTAGACATAAAATACAATATATTACTATACTGTAACTTTACTGTAACTTTTTTGATTTTTCAAATTACTTGTGGTGTTAAATTAATACAGTTCAAAATGATTGTGTGATTTCAAAAACATGCCAATTAGTGCAGAGTGTAAAAACTGATAAGACAGCAATCAATAATATTTATTATCTATAAAATATGCATCATAACGGTGAGGAAACAATGAGAGGTCTGATACTGTCTGTTACTTATTACTCTTTTGCAGATTTGAGTAGAGAAGCCAATGGACAACGAGACAGTAACAAACAGCATTCTCTTTGTGGAGGGATTGAAAGTTACACCTCAGTCTTCCTATCCTGTTTTCATCCTACTTCTCTTAGTTTATGCCTTTACTATGGGATGTAACATTGGACTTTTAATCCTGATCTCAACTGAGAGGAATCTGAATCACCCAATGCATTTTCTGTTCTGTAACTTGCCAGTGAATGATATAATTGGGACCTCTGTCATTTTGCCACGCTTACTGCAAGACATTTTAAGGGAACCCTCAGAGCGCTACATGACATATGTGGAGTGTGTTTTTCAAGCATATGTTGTACACATATTTGCAACTGTAAGCCACACTGCACTAATGATCATGGCCTTTGACAGATATGTGGCTATATGTAATCCATTGCGATACACAGCAATAATGACCAATAAAATGGTGGTTAAACTATCAGCATTAGCCTGGGGGTTGTCAGTACTTGCAGTGTCGATTCTGATAGGACTCACTGTACGCCTGTCTCGCTGCAGATATAAAATTGAAAACCCTTTCTGTGACAATGCCTCACTGTTTAAACTGTCCTGTGAGGACAGTGTGGTTATTAATAATTTGTATGGACTATTTTCTACTGTGATCATCTTTACTTTTTCACTTGGGTCTGTATTCATAACATATGGAAAAATTGTGGCAGTATGCAGAAGCAGGAAAAACAAATCACTCAACAGTAAAGCCATAAAAACATGTGGCACACACATAGCTGCATATATAATCATGTTTGTTTCTTGTGCCACTATGGTTTTTCTCCATCGTTTTCCAGAATACTCTGAAAACAGGAAACTAGCTAGTATAATGTTCCATATTGTACCACCAGGACTAAATCCTTTAGTATATGGTTTACAAACCAAAGAGATAAGACAAAAGACGGTTAAACTTTGCTGTAGAAACAAAGTTAATATAAAGTGATTTTTTATCGTATGGAAAAAATACTTTCATAAATATCTTGCTGAGGTTTACTTTGAACTTAAACTAAAAATAATGGTCTTGCACAGTTTTCATTTCTTTGTCTAACTGATTAACATCTAACATCTAACTCAATTTAAAGGAATAATAATTTATCTATAACAGTTGGTTAATTTCTTTAAAATATGTTTTTCCATCTATTTTCCGTCTCTTATGAATAGATTCTGAAACTGTAAAAAGAAAGTTTACACATTCACAGATATTTAGACACTTTAATTTTAATTGATGTCTCAGAACATTATATTTGCAAAACCAAGAAGATTCTATCCATTCTGACCATCTTTGTCAGTCTTTAGTTTTTACAAATGCTAAATTGGAGATTTCCCTCAGAGATCA

Function

NR:

description
Odorant receptor, family F, subfamily 115, member 7

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000006_00143205_00144149.mRNA True 1778 mRNA 0.33 1 142765 144542

Neighbor

gene id symbol gene type direction distance location
CI01000006_00140414_00141739 NA coding upstream 554 140023 ~ 142211 (+)
CI01000006_00110930_00139640 OR115-9 coding upstream 2871 110374 ~ 139894 (+)
CI01000006_00089909_00090850 NA coding upstream 51657 89416 ~ 91108 (+)
CI01000006_00075230_00076159 OR115-7, OR115-9 coding upstream 66367 74539 ~ 76398 (+)
CI01000006_00060296_00061324 OR115-7, OR115-9 coding upstream 81340 60232 ~ 61425 (+)
CI01000006_00158417_00184263 OR115-7, OR115-2, OR115-9 coding downstream 13815 158357 ~ 184336 (+)
CI01000006_00278488_00290221 SSH2B coding downstream 133946 278488 ~ 291704 (+)
CI01000006_00297085_00312816 CORO6 coding downstream 152543 297085 ~ 313055 (+)
CI01000006_00315992_00319208 NA coding downstream 170520 315062 ~ 319386 (+)
CI01000006_00363989_00372189 NA coding downstream 219447 363989 ~ 372264 (+)
G40722 NA non-coding upstream 48988 93560 ~ 93777 (+)
G40716 NA non-coding upstream 55933 86590 ~ 86832 (+)
G40707 NA non-coding upstream 65100 77321 ~ 77665 (+)
G40660 NA non-coding upstream 68281 74224 ~ 74484 (+)
G40659 NA non-coding upstream 70421 72128 ~ 72344 (+)
G40766 NA non-coding downstream 30685 175227 ~ 175447 (+)
G40775 NA non-coding downstream 84649 229191 ~ 233279 (+)
G40796 NA non-coding downstream 153869 298411 ~ 298726 (+)
G40797 NA non-coding downstream 154418 298960 ~ 299192 (+)
G40799 NA non-coding downstream 158473 303015 ~ 303227 (+)
G40772 NA other downstream 330923 475465 ~ 479194 (+)
G40767 NA other downstream 336090 360009 ~ 484185 (+)
G40768 NA other downstream 344333 488407 ~ 493026 (+)
G41170 NA other downstream 1547523 1692065 ~ 1695821 (+)
G41424 NA other downstream 2501120 2645662 ~ 2660570 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_019133 or115-8 coding NC_007132.7 CM002905.2 40254429 ~ 40256146 (+)