CI01000006_00278488_00290221 (SSH2B)


Basic Information

Item Value
gene id CI01000006_00278488_00290221
gene name SSH2B
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 278488 ~ 291704 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000006_00278488_00290221.mRNA
CATCAGTGAGAGCTTTCTAACAGTGAAAGGTGCCGCCCTTTTTCTTCCACGTGGGAATGGCTCCTCTTCCTCTTCCTGCTCCTCCAGAATTACAGCACAGCGCAGCAAACATGCAGGGGACCTTCAGCAGCACCTGCAGACCATGTTCACTTTACTGCGGCCAGAGGACAACATCCGTCTGGCTGTGCGGTTGGAGAGCACCTTCCCCCAGTGCACCCGCTACATGGTGGTGGTCTCCACTAATGGTAGACAGGACACAGAAGAGAGCGTGGTGCTGGGCATGGACTTCAGCCCCTCTGACAGTTCCTGTTCCATAGGCATGGTGCTTCCTCTGTGGAGTGACGCACGGATCCACCTGGATGGTGACGGGTCAGCCCTGCAGTCTCTTCATAAGGCCTGTGAAGTGGCCCGCTGTCATAACTACTTCCCAGGCAGCCTCTTCCTGACCTGGGTGAGTTACTACCAGAGCCGGGTGTCCTCAGATCAGGTCTGCATCAATGAATGGAACGCCATGAAGGACGTGCAGTCCCACCGCGCAGACTCGCCCGTGCTCTTCTCTGATGTGCCAACTGAGCGAGAAAGAACAGAACGACTCATCAAGAATCGTTTGAGAGAGATCATGATGCAGAAGGACCTTGAGAATGTCACCTCAAAAGATATCCGCACGGAGCTGGAGATGCAGATGGTGTGTAACCTACGGGAGTTTAAGGAGTACATTGATAATGAGATGATCGTCATCTTGGGACAGATGGACAGGCCCACAGAGATTTTTGAGCATGTTTACCTGGGTTCTGAATGGAATGCATCTAATCTGGAAGAACTACAAAACAGCGGGGTGCAATACATCCTTAATGTCACGCGGGAGATCGACAACTTCTTTCCAGGGCTATTTGAGTACCACAATATCCGGGTTTATGACGAAGAGGCCACAGACTTGCTGGCTTACTGGAATGACACTTACAAGTTCATTTCTAGAGCCAAGAAAGCAGGGGCAAAGTGCCTGGTGCATTGCAAGATGGGCGTCAGTCGCTCGGCCTCCACTGTGATCGCATATGCCATGAAGGAGTACGGCTGGGACCTGGAGCAGGCCTTTGAGTATGTTAAAGAGCGGAGGGCCGTCACCAAACCCAACCCATCGTTCATGAGACAGCTGGAAGAGTATCAGGGAATACTGATGGCCAGAGGTTGTAGGTTTGTGCATGTGGGCTTTGGTGTGGATAGTGATCTGTCTGAGCACCACGAGCCGCTCTGTAAGGCCACTGCTGCACAGTCTCTCGGACGCTCCAATTCCCGCAACCAGACCTTCGGCCAGACGTCACCTTCAATACACGAGCTACTGCAGACTCTCACACCCATCTCAGCCAATTCTACTGGAGTTAAGGAGCAGGCGGAGCCTGATACAACACCCTGGCCAGATACTCACATTTACAATGGCCTGGGAAACCTTGACGACAACCTCCATAAACCCACAGAGACCCCCTCCATCCCCAGATCCAGGGCTGCCACTGTGGTCCCGGAGGCTAGATCTGATGTCACCTCTGTGACCGTTGCTGAGGCGGTCTCGCTGGGTCGTCCTTATCCGCCCGCAGCTGTACATCACCCACCCTCGTCCCCCAGGCTTCTCTCAGATGCAAAGGCCAATCAAGTACTGCCTGAGCAGCTTGAGGTGTCCAACCTTGTGCCTTTGGAGAAGTCTAGTCCAAAGGTGCTCTCATCTGTGAACGTTAGGAGTAGGACTCCTGAGCCATGCACACAGGCCCCAGACTCTTCAGGGCTGCAGGATCTCAGCCAGCAAGTGCCTAACACGGAGACGGACTGTGCGGGGTTAAGTCACAGCAGTGATGAAGACCACCACCCCAGTGCCACATTACACAGAGCTGAGCTCTCTACCACCCCTCCCTCGACTCTAAGCACAGACCGCATTGACTTCTTCAGTGCCAGAGAGAAGTTCCAGGGCCTTTCTCAGGAGGGTCAGATCCGTGGGACTTCTGAGCAGGCGTTGCAGCAGGCACCTCGGGACAAAAGTCCAAGTGTAGAGACCAAACGGCTACTTCCTGACAACCCTATCAAAGAGGAGGAACAGAAAAAGGAGAGCTGCAGTGTCTCAGTCCATAACATAGTTTCAGAAATGGAATCCATACAGCACAGTGTAACCCCTCCCCCCCTTCCTACCAGCCAACCTGTTTCCTGTAGCAGCAGTGAGGAAGAGGAGTTCACTCCAGCCACATCAGCAGAAGCTGAAACTGAGAAGGTGGAGCATGGGAAAGATTGGCCAAAGGGCACCGTGCGCCGAGCCACCAGGGAGCTTGAGCAGAAGATCAAGCAGGTGGTCTCGTCAGTGGCACCGGTGTCCTCGGCCCCCGCATGTCCCTCGCTACGCTCCCCTGTCAACACCAGCAGCAGAGAGAAAACTGAGGAGACCTCATCCCACACGCACCTCACACCTGATCCAAGCACTGTGTCAACACACCATCACCAGCCTCAGAACAACACGGACAAGATGGAGAAAGATGAGAGTCTTTCGGCTGAAGAGGACAGAACAGGGAGTGAAAGCGAGAGACGACTCAGGGAGGGAGAGCACAGGAACACAGCCCTCACGCACTCAAGTCAAAGCCATTCCAATTCATCTAGCTCATCTCCAGTCGTGGTTCTCCAGCTTGAAGGAATGACCGAGCAGGAGAGTTACACTGACTCTGACTGTCCCCTGGGACTCTGTCCAAAGGACATGAGAGAAACCTGGGAGACCCTGAAAGAGCTTGGGGCGTTCCTCTGGCAGGTGAGTGGCTGCTCCGACAGGTCCCTCCCGTGGTCAAGGAGGGAGCAAAGAAAGGGCTGGGCTATGCGAGAGAGGACCAAAGAGGTGGAGGCTCGGATCCGGCAGGCTGGACTGACCCCACCCTCAATGATGAAGCGCTCGGCCTCGTTGGCCAAGCTTGGGTCGTTGGAGCTCTCGCCCGTTGACCTGAGCGAGCTTGATTTGCGTCGTCCCGCCTTACTCCCTGCTCCCACCAATAAGCCACGGCCCCACTCGTACAGTGACGATACCTCAAAAAAGAAGCGTGTTTTACCTCTTTGCACTCCTGCTCTCCCTTCCTCTTCTGCCTCTCCTGTTTCGTCCACTGGATCTCATACACTCGGACACGCAGAGAATAATGATCAGACTGAAGAGGCGGAATATAGTGACTCTGATGTCATTCCCATGCCACTGCCACTCTCCCCACCCTCCAATCAATATTGGAGGGAGGATAATAAACAGGAGGAGGCAGGTTACGCCCCGTTAACTGCTCCTGCCTCAATACCCGTGGCAACACGCCAACAATATGGGAGGACACATCCCCTGCGGAGGCTGAAGAAACGAACTGTTAACCCTTATCACACTATGTGACTTTTATTCTGTATGTGTGAGTGTATGTGTTTGTGCCTGCAAGTGTGAATTTGTGATTTAAAGGGATAGTTCATCCAAAAATGATAATTCTGTCAACATTTATTCACCCTTATGTCAGTCCAAACCTGTATAACTTTCTTCTGTGGAACCCAAAAGAAGATATTTTTAAAAATGTCTCATTGTTCCGCATAAGAAACAAAGTCTTACAGTTTTGGATCGACATGAGGATGAGTAAATGATGACAGAATTTTCATTTTTGGCTGAACTATCTGTTTAACTTGCCACGCATACCTCAGTGGGCCTTATCCAACCGGAAATCAAACAATGTGGACATTTTATAGCACAATGTGATTTGAATGTTTTTGGTGGGATTGATGGCTCATAAAATAGGAACTGTGTAATCCTGACCCATCATTTGAGTAGAAAAAAATTGCTGCTCTGGAGGAACAATGAAGTGCTATGACTGATATACTTTTTGCACAGTGTCTATCAGGTTGTTCTTTGCATACTATGGTAGTACATTACCACTTCATCCTTTACCTGTCAGTCTATGAACGAAACCCACAATGTTCTCTGCTGAATTGGATTCTGGAGGTGTGTGTGCATGTATGTGCGTGTGTGTGTGTGTGTGTTGGGGGTTGAAGGAGAGCCATAGATGAGTGTTTTTAAATACATTCAGAAAAGAATGAGATGTAATTGTGAGTGTAAAATTATTACAGATGTGAGATTAATATGTGTATGCATGTTGGATTAATGAGAATGGGATCAGTTCTGTGGTACTCGTAGAATGTAGAGTTTATGGGCCTCATTGTGCGTATGTATATTTTGTGGATGTGTATGATATGTATACTTAAACATGGGTGTGTGTGTATTTTCTGTCTGTTTTTGGTGCAGTTTCTTTCTTCAGCATTTTCTGTTTTATTAAAGGGACAACAAAAAAGAAACATGGGGTATTTTAATATGCACTTTTTATTATTGTTTTACGTTTTTTTAAACTGTGGTTTGTATTCTGGAAGCATGCTCACAGAGTATGTATTTAGAGTTGCTTTTAAGGGTGTTTGTTGTACAGTGCAGAAAAGAAAAAGAAAACTGAAATGTCTTTCTGTTTGTTGTAAGACTGGAAAAATATTTTCTCTTTTTATTGTGCTTAAACTGTGACAATTAAAGAAAATTTCAAATTCACAAAGATTTTTTGGTATTTTTGGGGGAGGGGGGTATTTTATGACCAGGTTTCCACAGTCCTTAAAAAAAAAAAAAAAAAACCCTGGACACTTTTTATTTTTCAGGCCTAAAAAATTTAATCTTAAAATGTCATGGGAAATTAATTTTCATATTTTTTTTTTTTGTAAGAAATATGTAAATAGAAATTGCTCTTTGTGAGGCCAGTCTCTATAAATAATAATAATAATCATTATCCAGTAATCATAAATGACAAGGAAAGTACAGTAATGCATGAAAGCTATAGACTGTTCAGAAGGTATAA

Function

symbol description
ssh2b Predicted to enable actin binding activity and phosphoprotein phosphatase activity. Predicted to be involved in actin cytoskeleton organization and negative regulation of actin filament polymerization. Predicted to act upstream of or within protein dephosphorylation. Predicted to be active in cytoplasm. Orthologous to human SSH2 (slingshot protein phosphatase 2).

GO:

id name namespace
GO:0010591 regulation of lamellipodium assembly biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000006_00278488_00290221.mRNA True 4868 mRNA 0.48 13 278488 291704

Neighbor

gene id symbol gene type direction distance location
CI01000006_00158417_00184263 OR115-7, OR115-2, OR115-9 coding upstream 94152 158357 ~ 184336 (+)
CI01000006_00143205_00144149 NA coding upstream 133946 142765 ~ 144542 (+)
CI01000006_00140414_00141739 NA coding upstream 136277 140023 ~ 142211 (+)
CI01000006_00110930_00139640 OR115-9 coding upstream 138594 110374 ~ 139894 (+)
CI01000006_00089909_00090850 NA coding upstream 187380 89416 ~ 91108 (+)
CI01000006_00297085_00312816 CORO6 coding downstream 5381 297085 ~ 313055 (+)
CI01000006_00315992_00319208 NA coding downstream 23358 315062 ~ 319386 (+)
CI01000006_00363989_00372189 NA coding downstream 72285 363989 ~ 372264 (+)
CI01000006_00418370_00420217 SPAG16 coding downstream 126666 418370 ~ 420317 (+)
CI01000006_00423835_00428157 NA coding downstream 131389 423093 ~ 428369 (+)
G40775 NA non-coding upstream 45209 229191 ~ 233279 (+)
G40766 NA non-coding upstream 103041 175227 ~ 175447 (+)
G40722 NA non-coding upstream 184711 93560 ~ 93777 (+)
G40716 NA non-coding upstream 191656 86590 ~ 86832 (+)
G40707 NA non-coding upstream 200823 77321 ~ 77665 (+)
G40796 NA non-coding downstream 6707 298411 ~ 298726 (+)
G40797 NA non-coding downstream 7256 298960 ~ 299192 (+)
G40799 NA non-coding downstream 11311 303015 ~ 303227 (+)
G40800 NA non-coding downstream 13303 305007 ~ 305266 (+)
G40811 NA non-coding downstream 62016 353720 ~ 353963 (+)
G40772 NA other downstream 183761 475465 ~ 479194 (+)
G40767 NA other downstream 188928 360009 ~ 484185 (+)
G40768 NA other downstream 197171 488407 ~ 493026 (+)
G41170 NA other downstream 1400361 1692065 ~ 1695821 (+)
G41424 NA other downstream 2353958 2645662 ~ 2660570 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_019146 ssh2b coding NC_007132.7 CM002905.2 40417116 ~ 40475727 (+)