CI01000006_00586425_00608567


Basic Information

Item Value
gene id CI01000006_00586425_00608567
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 585968 ~ 609091 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000006_00586425_00608567.mRNA
TTATATAAATTAGAGCTTGCACGGCTATGCATTTTACTAGTCAACCAAGTAGGCAGATCGGATGTTTTCCTTAGTCAAATAAAAGGTTGCGTTAGTTATTTTTGCAAATTTCCACACATTTAAATTGACATCCACCATTTGTAGAGATAAAATGCAGGACAGAAAACCATTTAAACCATAGCAATTTTCCTATTATTAAATAGGATATTTAAATAAATGTTAAACATGTGACTGGCCACGTGACAAGCGCATTTCCCGGTTCACTCCTCCAACGTGAATATATCGTCATCTAAATGCTGGAGTTATCACTATCACTGAGGAACCATGCAAATATATTTTTACAGACATCCCCATGAGAAACGATTACCGCCCGAATAGGGTTATAGTCCACTAAACGAGAACTCCATGCTGCATTGAACAGCCTCCTTGACAAACTATCCTCCATTTCTATTAGCTAATGGCAGCGGCTCATGGAGGAATTATGGGAACTGGCCTGCTGATGACCGTAAGCAGGTCATCTCGATTTGATCTTCCAAAGGAGCCTGTATTATCCACTCCAGCGGTCTGGTTTATCAGAGCCGTCTACAAAGAGACACACGGGCTTGTTCCCTTCCTCTCGGCCTACATTTATCCTAACAAATACAGACAGCAGAGGAAAGGAAAAATTACCCACACGAGGTTGATGCTACATATCGGATATGCCTCTGGGTGCCAGGCAGTAAAAAAACTGGAACAACAAAGGCGAGCATGTAAAAAATTCAGATGGGGAAATGAAAGCAGAACGTGTGTCAGCAACTCAGAAGCACAAGTTAGTAAGGAAAGGGTTGTAACAAAGACTGTTCTGCATCCAAGCGTTACCGCCGCTGCCAGAGGAGCAAAGCCTTCCTGGAGCCCCGCCAAAGACAAGTGTGACCAGATCAAAGAACATGACGAGAAGCTGATACTTGGGCGAAGTGAACACAAACACTGGCTTGTTGACGGAGAGGTGAAGCGACAGCTTGCTCAGTGTTACGTTCCAGCAGGAAGAGAGCAAGGGGAGATCGGGCCAGGCAAAAATTTAGCCAACACCCCGGCGAAGAAGACAAATTGTTATGCAGTGCCCCGATCTGGCACGCTCCTCCTGGAGATTAATTACTCTTCCCTACACAACAAACAGAATCAGTGTTGGAGGGGGGCTGGCGGAGAGGGCAGAGGACGACGCAGGTGTGCATGTCGAAATGCACTGCATGATGAATCAAAGGCAAACTACCGAGTTGAGAGAGCCACACAACCAGCTGACTCGAAGTTCACCACTCTCAGCTTTCACCGCTAGCCAGAGGCGGTCTGAAATCTTCCTTTATCGACTCGAGGTCATACTCTGGTTCTCTCTGCATTGCTGGCAAGGTCTCCGTCCTTTATTTAATGAAAAACTCAATTTGATATTTATCTTGCTGCACAAAGAGCCACACAAATTGTGAGCCACCAATTTTCATGCCCCCGTTTTCCATTTGACTCCTTCATTCACATTCAAACCGGAGATAAATACCTGCACAGAGCACAGACATTTAACATCTCTGGCTATTCAGCAAGGAGCCTCAAAAACCCCGTCAATTCTCATCATTGAATCTTCTAACCTTTCCACCCAGATGCAGCTTTTCAAACAGCAAAACAAGAGCCTTTCGCCCTAATCCCAGAGACAAACCACTCTGAACGCCTCATGCTGCCTGAACATGTTTTGCTGTGCCCAGATATTCCACAACCACTGCACTGATGTCTCACAAAGCCGCTTTTTCAGCGCCTACAGCTAATATTTCCCAAAGACACTGTTCAGACTGACAGTCAGTGTACCACAGATAA

Function

NR:

description
hypothetical protein cypCar_00011078

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000006_00586425_00608567.mRNA True 1836 mRNA 0.45 5 585968 609091

Neighbor

gene id symbol gene type direction distance location
CI01000006_00537552_00548276 NA coding upstream 37377 537452 ~ 548591 (+)
CI01000006_00502041_00503898 NA coding upstream 81662 502041 ~ 504306 (+)
CI01000006_00423835_00428157 NA coding upstream 157599 423093 ~ 428369 (+)
CI01000006_00418370_00420217 SPAG16 coding upstream 165651 418370 ~ 420317 (+)
CI01000006_00363989_00372189 NA coding upstream 213704 363989 ~ 372264 (+)
CI01000006_00612891_00618198 RBM22.S, RBM22 coding downstream 2896 611987 ~ 618372 (+)
CI01000006_00647015_00654423 NA coding downstream 37924 647015 ~ 655017 (+)
CI01000006_00666971_00667988 NA coding downstream 57702 666793 ~ 668405 (+)
CI01000006_00674724_00686031 NA coding downstream 64764 673855 ~ 686506 (+)
CI01000006_00766356_00790875 CNOT6, CNOT6A coding downstream 156875 765966 ~ 791155 (+)
G40852 NA non-coding upstream 34612 529128 ~ 551356 (+)
G40768 NA non-coding upstream 93656 488407 ~ 493026 (+)
G40767 NA non-coding upstream 101783 360009 ~ 484185 (+)
G40811 NA non-coding upstream 232005 353720 ~ 353963 (+)
G40800 NA non-coding upstream 280702 305007 ~ 305266 (+)
G40904 NA non-coding downstream 17642 626733 ~ 630432 (+)
G40935 NA non-coding downstream 105813 714904 ~ 715650 (+)
G40925 NA non-coding downstream 114730 723821 ~ 786328 (+)
G40919 NA non-coding downstream 295694 904785 ~ 906069 (+)
G40772 NA other upstream 106774 475465 ~ 479194 (+)
G41170 NA other downstream 1082974 1692065 ~ 1695821 (+)
G41424 NA other downstream 2036571 2645662 ~ 2660570 (+)
G41591 NA other downstream 2227076 2836167 ~ 2839421 (+)
CI01000006_03734862_03735227 BANF1, BANF1.S, BANF1.L other downstream 3120139 3734554 ~ 3736035 (+)
G41996 NA other downstream 4508115 5117206 ~ 5124149 (+)

Expression


Co-expression Network