Gene
RNA
| Item | Value |
|---|---|
| gene id | CI01000006_01842317_01859671 |
| gene name | NA |
| gene type | misc |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000006 |
| NCBI id | null |
| chromosome length | 13024002 |
| location | 1842317 ~ 1861834 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| CI01000006_01842317_01859671.mRNA | False | 5889 | mRNA | 0.43 | 29 | 1842317 | 1861834 |
| TU46815 | True | 1140 | lncRNA | 0.35 | 1 | 1860304 | 1861443 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000006_01814388_01822488 | TNFSF10L3 | coding | upstream | 19446 | 1814388 ~ 1822871 (+) |
| CI01000006_01778632_01788481 | RIR1, RRM1 | coding | upstream | 53836 | 1778632 ~ 1788481 (+) |
| CI01000006_01712959_01738587 | STIM1B, STIM1 | coding | upstream | 102992 | 1712959 ~ 1739325 (+) |
| CI01000006_01680551_01688030 | PGAP2 | coding | upstream | 153662 | 1680551 ~ 1688655 (+) |
| CI01000006_01666458_01679245 | NCBP3 | coding | upstream | 162400 | 1666241 ~ 1679917 (+) |
| CI01000006_01890066_01892979 | RAB39BB, RAB39B, RAB39A, RAB39BA | coding | downstream | 27879 | 1889713 ~ 1893123 (+) |
| CI01000006_01943602_01960621 | AFAP1L1B | coding | downstream | 81768 | 1943602 ~ 1960621 (+) |
| CI01000006_01964013_01964347 | GRPEL2 | coding | downstream | 102179 | 1964013 ~ 1964457 (+) |
| CI01000006_01965496_01966308 | NHP2, NOLA2 | coding | downstream | 103662 | 1965496 ~ 1966354 (+) |
| CI01000006_02023656_02025259 | SLBP2 | coding | downstream | 161822 | 2023656 ~ 2025744 (+) |
| G41225 | NA | non-coding | upstream | 2435 | 1838142 ~ 1839882 (+) |
| G41165 | NA | non-coding | upstream | 342153 | 1499912 ~ 1500164 (+) |
| G41128 | NA | non-coding | upstream | 343284 | 1420533 ~ 1499033 (+) |
| G41134 | NA | non-coding | upstream | 382655 | 1451243 ~ 1459662 (+) |
| G41087 | NA | non-coding | upstream | 456804 | 1298166 ~ 1385513 (+) |
| G41262 | NA | non-coding | downstream | 54800 | 1916634 ~ 1916911 (+) |
| G41263 | NA | non-coding | downstream | 56571 | 1918405 ~ 1918737 (+) |
| G41242 | NA | non-coding | downstream | 57098 | 1918932 ~ 1923944 (+) |
| G41276 | NA | non-coding | downstream | 151432 | 2013266 ~ 2015646 (+) |
| G41246 | NA | non-coding | downstream | 154296 | 2016130 ~ 2022876 (+) |
| G41170 | NA | other | upstream | 146496 | 1692065 ~ 1695821 (+) |
| G40768 | NA | other | upstream | 1349291 | 488407 ~ 493026 (+) |
| G40767 | NA | other | upstream | 1358982 | 360009 ~ 484185 (+) |
| G40772 | NA | other | upstream | 1363123 | 475465 ~ 479194 (+) |
| G41424 | NA | other | downstream | 783828 | 2645662 ~ 2660570 (+) |
| G41591 | NA | other | downstream | 974333 | 2836167 ~ 2839421 (+) |
| CI01000006_03734862_03735227 | BANF1, BANF1.S, BANF1.L | other | downstream | 1867396 | 3734554 ~ 3736035 (+) |
| G41996 | NA | other | downstream | 3255372 | 5117206 ~ 5124149 (+) |
| G43896 | NA | other | downstream | 3908255 | 5770089 ~ 5771775 (+) |
