CI01000006_02774064_02933983 (NRXN2A)


Basic Information

Item Value
gene id CI01000006_02774064_02933983
gene name NRXN2A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 2774064 ~ 2933983 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000006_02774064_02933983.mRNA
ATGATGACGCGGAAGTGGAGGTGCGGTGTGAAGTTCTCGCGGGCCTCCGTTTGGCTGGTACTCCTGGTGGCTGTCGCAGTCACCGCAGCCTTGGAGTTTGACGGTCTGCCGGGCCAGTGGGTTCGCTATGGACCCTGGGAGGCGAAAGCCACCGGAGAGCTGAGCTTCACCATGAAGACAAACATCAGCAAAGCTGTAGTGCTATACCTGGACGATGGCGGTAACTGTGACTTCCTGGAGCTCCTGATCAACGACGGCCGACTGCAGTTGCGTTTCGCAATCCACTGCGGCGAGCCGGCCTCGTTGCACATGGAGACGCCCGTCAACGACGAGCGCTGGCATCGCGTGCTGTTAACAAGGAATTACCGTGAGACCATGCTGGTGATGGATGGGGAGAGCAAAGTGGCGGAAGTGAAGTCCAAGCGAAGGGAGATGATGGTGGCCAGTGACTTGTATGTAGGCGGGATCCCACCGGACGTGCGTCTCTCGGCCCTCACATCCAGCACAGTCAAATACGAGCCGCCTTTCCGAGGCCTGATCGCCAACCTGAAGTTAGGCGAGACTCCTCCTGCCCTCCTGGACAGTCAGGGGGTGAAGAACGATCTGGAATACCTGTGTACCAAACAAAACCCCTGCAGCAACGCAGGACGCTGCTCCATTCACGACAGCGAGGTGCTGTGCGATTGCTCTAATACCGGCTACAAAGGGAAATACTGCACTGAAGGTAAGCAAGATGATGTGCTCAAGGCTTTACATAACATGAAGATGTTCTTATCATTTCAAGGTAAAATCTCTAATGACATTCCCTTGCCTTTTTCTATCTCCCTTCAACAAGGCCAAGTGGAGTCAGTGGCCACATTCAAGGGTAATGAGTTCTTCAGCTACGACCTGTCCCAAAAGCCCATCCAGAGCAGCACCGATGAAATCACCCTGTCCTTCCGAACACTGCAGCGGAACGGCCTCCTGCTTCACACTGGCAAGTCTGCCGACTATGTCAACCTGTCTCTGAAAAGTGGGGCCGTGTGCCTGGTCATCAACCTGGGCTCCGGCGCCTTCGAGGCTCTGGTGGAGCCGTCCGACGGCAAGTTCAACGACAATGCCTGGCACGCTGTCAGAGTGTCCCGCAACCTGCGTCAGCGCGCAGGGGTTGGACTCCCTACGGTAAACAAACTGCATTATATGGTGACTATATCGGTGGACGGGCTTCTGACGACCACTGGCTACACCCAGGAGGACTACACCATGCTGGGTTCAGATGATTTCTTCTACGTGGGCGGCAGTCCAAACACCGCGGATCTTCCCGGCTCCCCCGTGAGCAACAACTTCATGGGCTGCCTTAAAGATGTGGTCTACACCAATAATGAGTTCAGACTGGAGCTCTCCCGCCTGGCTGAATTGCGCGACCCCAAGGTCAACATCCACGGCGACCTGACCTTCCGCTGCGAGGATGTCGCCGCATTAGACCCTGTCAGTTTCGACGTGCCGACCGCTTTTGTAACCCTTCCACGTTGGAACACCAAGAAAACCGGCTCTGTGTCCTTTGACTTCCGAACCACCGAGCCCAACGGCCTTTTGCTGTTCAGCCACGGGCGGCCACAAGGTTCCAAAGACCGCCGGCCGAAGGTGGACTTCTTCGCTATGGAGCTACTAGACGGATTCCTCTACCTGCTTATGGACATGGGCTCCGGGAGCATCAAGATGAAAGTCGGAAACAAAAAGGTCAATGACGGAGAATGGTGCCACGTGGATTTCCAGAGAGAGGGCAGGAAAGGCTCCATCTCCGTTAACGGCCGTAGCATGCCCTTCTCCACCAACGAGGGCAGTGAGATTCTCGATCTCGATGGTGAAATGTATCTGGGAGGTCTGCCGGAGGACAGCGGCGGTCTTCCTCTCCCGCCAGAGGTGTGGACCGCCCGCCTCAGGCTGGGTTTTGTGGGTTGCGTGCGGGACCTCTTTGTAGATGGGCGCAGCAAAGACCTGCGGCGGTTGGCGGAGCTTCAGAGCGCTCCGGGTGTCAGCAGCTTCTGTACAAGGGAGACACATCGGAGGTGCAGCTCCGAGCCCTGCGCCCACGGAGGCCGCTGCCGCGAGGGCTGGAATCGGCATGTCTGCGACTGCACTGGAACTGGATATCTGGGCCCCAACTGTGAGATGGAGTCTGCAGTACTGAGTTATGACGGCAGCATGTTTCTGAAGATCCTGATGCCTCACGCCGTTCACACTGAGGCCGAGGACGTGTCTCTGCGCTTCATGTCACAGAGGGCTTACGGTCTGCTCATGGCCACCACCTCCAAAGAGTCCGCCGACACCCTGCGCCTGGAGCTGGACGGAGGAAGGGTCAGACTCACCGTCAACCTAGGTAACCTTTCACCGCTGACCTCCGAATGTAAAGGACCGGAGACTCTGTTCGCAGGGCATAAGCTGAATGACAATGAGTGGCACTCTGTGAAGGTGGTGCGCCGTGGGAAGAGCCTGCAGCTTTCTGTTGACAACGTGACCGTGGAGGGCCAGATGAGCGGAGCACACACGCAGCTGGAGTTCCACCACATAGAGACGGGCATCATGACTGAGCGGCGCTTTATCTCAGTCATGCCTTCCAACTTCATCGGCCACCTGCAGGGCCTCTCTTTCAATGGCATGCCGTACCTAGACCAGTGCAAGAATGGTGACATCTCCTACTGCGAGCTCAATGCTCGCTTCGGCATGCGCCGCATCGTGGCCGATCCGGTCAGCTTTCGGAATCGAGCCAGTTATGTGGCGCTGTCCACCCTGCAGGCTTACGCCTCCATGCACCTCTTCTTCCAGTTCAAGACCACCAGCCCAGATGGTCTGATGCTGTTTAACTCTGGAGACGGCAGTGACTTTATCGTGATTGAGCTTGTGAAGGGGTACATCCATTATGTTTTTGACTTGGGCAATGGGCCGTCGCTCATGAAGGGCAACTCCGACAAGCCGCTCAATGACAACCAGTGGCACAATGTGATGGTGTCCCGCGATGACAGCAACGTGCACACGCTCAAGATCGACTCCCGCACGGTCACGCAGCACTCCAATGGAGCCCGCAACCTGGACCTCAAAGGAGAGCTGTACATTGGAGGTGTGGGGAAGAGCATGTACAACAGTCTGCCCAAGCTTATAGCATCGCGGGATGGCTACCAGGGCTGCCTGGCTTCAGTTGACCTGAATGGCAGACTTCCTGACCTGATCGCAGATGCTCTGCACCGCGTGGGCCAAGTGGAGCGAGGCTGTGAA

Function

symbol description
nrxn2a Acts upstream of or within chemical synaptic transmission and motor neuron axon guidance. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in nervous system and spinal cord neural tube. Orthologous to human NRXN2 (neurexin 2).

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K07377 NRXN; neurexin

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000006_02774064_02933983.mRNA True 3252 mRNA 0.57 11 2774064 2933983

Neighbor

gene id symbol gene type direction distance location
CI01000006_02665949_02677083 RASGRP2 coding upstream 96849 2665949 ~ 2677215 (+)
CI01000006_02616480_02616828 NA coding upstream 157225 2616480 ~ 2616839 (+)
CI01000006_02613864_02614742 NA coding upstream 159304 2613754 ~ 2614760 (+)
CI01000006_02531899_02588907 NRG2A coding upstream 184301 2531816 ~ 2589763 (+)
CI01000006_02490349_02491048 NA coding upstream 282946 2490349 ~ 2491118 (+)
CI01000006_03016090_03016706 NA coding downstream 81154 3015137 ~ 3017314 (+)
CI01000006_03102358_03152576 NRXN2A coding downstream 168375 3102358 ~ 3152869 (+)
CI01000006_03164803_03183473 PCNX3 coding downstream 230206 3164189 ~ 3183719 (+)
CI01000006_03232003_03242938 NA coding downstream 298020 3232003 ~ 3243362 (+)
CI01000006_03294091_03298089 SLC29A2 coding downstream 360005 3293988 ~ 3298671 (+)
G41570 NA non-coding upstream 29267 2737136 ~ 2744797 (+)
G41494 NA non-coding upstream 64049 2709526 ~ 2710015 (+)
G41488 NA non-coding upstream 73238 2700607 ~ 2700826 (+)
G41433 NA non-coding upstream 129679 2634103 ~ 2644385 (+)
G41482 NA non-coding upstream 141234 2632214 ~ 2632830 (+)
G41547 NA non-coding downstream 42711 2976694 ~ 3053920 (+)
G41554 NA non-coding downstream 61787 2995770 ~ 3006315 (+)
G41538 NA non-coding downstream 88115 3022098 ~ 3032710 (+)
G41605 NA non-coding downstream 263853 3197836 ~ 3198286 (+)
G41606 NA non-coding downstream 264579 3198562 ~ 3198765 (+)
G41424 NA other upstream 113494 2645662 ~ 2660570 (+)
G41170 NA other upstream 1078243 1692065 ~ 1695821 (+)
G40768 NA other upstream 2281038 488407 ~ 493026 (+)
G40767 NA other upstream 2290729 360009 ~ 484185 (+)
G40772 NA other upstream 2294870 475465 ~ 479194 (+)
CI01000006_03734862_03735227 BANF1, BANF1.S, BANF1.L other downstream 795247 3734554 ~ 3736035 (+)
G41996 NA other downstream 2183223 5117206 ~ 5124149 (+)
G43896 NA other downstream 2836106 5770089 ~ 5771775 (+)
CI01000006_06104927_06109730 NA other downstream 3174501 6104927 ~ 6109820 (+)
CI01000006_06122278_06122736 NA other downstream 3188052 6122035 ~ 6122751 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location