CI01000006_03016090_03016706


Basic Information

Item Value
gene id CI01000006_03016090_03016706
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 3015137 ~ 3017314 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000006_03016090_03016706.mRNA
GGATAAAATGCAGTGCTAATCGATACGGTGTTCGCATCAGAGGCAGAGACAAGAATCCAAGAGAGGGATCTAGGATGGTGCTGGAAAACTGATCCAGCTTCCACTTCAAGAGGGAGCGCACAGCGGAGAAGCTTCGCGCTGCGTCTGCAGCCGGCTTTATTTATTTATTTGCTGCTTTTTCCCTCTACCATGCTGCAGCAGAAGTCTCTCTTTCTCTCTCGTCTGTGAAAAGGAAACGTGAGCGCTCCATCGCCTTCATCGCGCCCGGGTCAGTCTCATTCTCTCTGTTTCCTCCTTTCTCTGTTTCCTGTCATCTTTTAATCAGTATTAGAATAATCCATTAGCCACCGGGATGTCTCTTATCTCCTCTTGCACGATAGAGGAGCTGCCCTCTGAGGGAGAGTGGTCTAAATAGCGTGTAAGCCGTACCTGAGGCTGGGAACTAGAAGGGAGACGCCTCCCGGCATCTCGTCCACCTGGAGCGTTTCTCCTCTCTTCAATTAAGTCGCAAGATCTGCATCCAGAAATATTGATCCATGCGGCCGTGATTAGAACGCTTTTGGGAGTTGCAGCGCAGATGATTATCGACTCGATTGAGCCTGCCCTCCTTCTCTTCGCAGACAAGCTCCCTTGTTTGGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAGGAGGGACGGTGAACTCTACTGGATTTGGAAATCAAACCTTTNTGCCCAATTGGTTTTTTTCCCCCTTTGGTTTTTTGAAGCCATACTTGAAAGGAATTTCTTCTTTTTGAGGATTTTATCGTCTCTTTGGAAGCCTACTGTGAAAGCCTCTGGGCTTTGGGTAGCATTGTTTTTTTTTTTCTGCATCATTTACTTGACCCGTGGATAATGATTGACATGGGCAACGCTCTCTGAGATGTACTCTTTCCAACGGGTGGGACAAATGGGGTGTGGAAGGGCCTACGCTGGGCCTTCTTGCCCCAAGCTGGAGGTGGTGTTGCTGGGCTGGGAGTGTGGTGGAGGCAGCTGGCTGGGCCTCGGCTCTTGGTGGAGACTGGCATTATCTCTGGCCTTGTTGGCCTCGGTGCCGGACAGATCGGCCAGTGCCCGTGTGTCTTCCAGCCTGAGCACCACACACCATGTCCATCACTTCCATAACAAGCATGGTACTGTACCCATCGCCATCAACAGGATGCCCTTTCTCACGAGAGGAGGCCACGATCACATGGGGAGTGGCCTTGTGCTCTTTGCACTCACTGCAGATTTAGAGGAAGGATGGGTTTGTTGGATAAAAGTGTGGGCCAGATGTGCTTCTTTTCATCTCCTGCTACAATTGCTCCTTGCCAGGCATCTTTTTTGACACCTTTGTCAATCAAAGATTGTGTGCAGCATTGACAACCTGTCTTCCTGCTGAGCTCTAGCATATGTTGAGTGTCCAGTGAGCTTGTCATATTCCAGTGATAATACTCAAAGTTGAATAGCTGGCTTTAATCAGGCTTTAATCACCTGCTAGAGTTTCTAGCTGCTTAAGAATTTATTTTTGTGCTTTTTGGATTATGCTTTAGGACCTTCATCTTCTTTGATAGATCATTTAAAAAATAATAGGACATTTAAAAAAAAAAGTGAATTGTAAAAATAGCATGGATATTGCTTATTAGCTTGCATATTACTAGGATATTGGCTGTTTATTAGTACTTATAAAGCACATATTAATGCCTTATTCTGTATGACCATATTCTACATCCCTTAACCCAATACATAAACTTAACAACTACCTTACTAACTGTTAATAAGCAGTAAATTAGGAGTTTGAGGGGGAAAAAATCTGTAGTTAATAGTTTATATGTGTTCCCTATACTAAAATGTTACCCAAAAGTCATCGTTAATAGTTAATAGAGAGAATTGGACCCTAATCTGAAGTCTGACCTAATAATAATAATAATAATAATAATCTGTTCATCTCAACAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000006_03016090_03016706.mRNA True 1978 mRNA 0.43 2 3015137 3017314

Neighbor

gene id symbol gene type direction distance location
CI01000006_02774064_02933983 NRXN2A coding upstream 81154 2774064 ~ 2933983 (+)
CI01000006_02665949_02677083 RASGRP2 coding upstream 337922 2665949 ~ 2677215 (+)
CI01000006_02616480_02616828 NA coding upstream 398298 2616480 ~ 2616839 (+)
CI01000006_02613864_02614742 NA coding upstream 400377 2613754 ~ 2614760 (+)
CI01000006_02531899_02588907 NRG2A coding upstream 425374 2531816 ~ 2589763 (+)
CI01000006_03102358_03152576 NRXN2A coding downstream 85044 3102358 ~ 3152869 (+)
CI01000006_03164803_03183473 PCNX3 coding downstream 146875 3164189 ~ 3183719 (+)
CI01000006_03232003_03242938 NA coding downstream 214689 3232003 ~ 3243362 (+)
CI01000006_03294091_03298089 SLC29A2 coding downstream 276674 3293988 ~ 3298671 (+)
CI01000006_03319103_03319306 NA coding downstream 301789 3319103 ~ 3319520 (+)
G41554 NA non-coding upstream 8822 2995770 ~ 3006315 (+)
G41570 NA non-coding upstream 270340 2737136 ~ 2744797 (+)
G41494 NA non-coding upstream 305122 2709526 ~ 2710015 (+)
G41488 NA non-coding upstream 314311 2700607 ~ 2700826 (+)
G41433 NA non-coding upstream 370752 2634103 ~ 2644385 (+)
G41538 NA non-coding downstream 4784 3022098 ~ 3032710 (+)
G41605 NA non-coding downstream 180522 3197836 ~ 3198286 (+)
G41606 NA non-coding downstream 181248 3198562 ~ 3198765 (+)
G41614 NA non-coding downstream 231809 3249123 ~ 3250070 (+)
G41543 NA non-coding downstream 240735 3258049 ~ 3263442 (+)
G41591 NA other upstream 175716 2836167 ~ 2839421 (+)
G41424 NA other upstream 354567 2645662 ~ 2660570 (+)
G41170 NA other upstream 1319316 1692065 ~ 1695821 (+)
G40768 NA other upstream 2522111 488407 ~ 493026 (+)
G40767 NA other upstream 2531802 360009 ~ 484185 (+)
CI01000006_03734862_03735227 BANF1, BANF1.S, BANF1.L other downstream 711916 3734554 ~ 3736035 (+)
G41996 NA other downstream 2099892 5117206 ~ 5124149 (+)
G43896 NA other downstream 2752775 5770089 ~ 5771775 (+)
CI01000006_06104927_06109730 NA other downstream 3091170 6104927 ~ 6109820 (+)
CI01000006_06122278_06122736 NA other downstream 3104721 6122035 ~ 6122751 (+)

Expression


Co-expression Network