CI01000006_03164803_03183473 (PCNX3)


Basic Information

Item Value
gene id CI01000006_03164803_03183473
gene name PCNX3
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 3164189 ~ 3183719 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000006_03164803_03183473.mRNA
GTATAAAAAGCTCAAGCAGTTGTTCAGTGATCTTATACATATCTCTTGACATCTCTAAAATTAAATATTATATTATACCCCTAAATGAAACCCGATTCCTGAATTGTATTTTCTAGAAATCCCACATTAGGCTACTTTATCTAAATCAGACAAATGTCTCAAGCCTTATTATCACGCCACAAATGGGTTAAAATGACCATATTCAAAATAGCCTGTTGATCTTAAGTATGTCATCAGAACAGCTTGTTTATTTATGGAATTGTGTTTGTTTAAAGTGCTGGGAAGTTATAAAGAAACCAAACCAAGCAGTTTTGATGATTCCTCAGGATGAATGTTTTCATGTAGCCCTTGGGTCACAGTTGTGCCAAAAACTCTTGATGAACTGCACTACAAACAGGGGTCTGCTGGAGGAGCATGCAAAAGAACAGTCGATGCTGAAAAAACACAGGCCTGAAGTTGTTCTGTATCGTCGCACACTCTGCTAATTTTTTGGGCAGCCTTTTCATTTCCAGTCCGAGAAAGTCCATCCTGAGGTTCCCAATGGAAGTACCGCACTAGAACCTTTGAGAAGGGAACGTAAAGAACTCTGAGTTGTCTCATCCCGAAGCGATAAGATGGGCTCTCAAGCTCTTCAGATATTGCGGCAGGGAGTGTGGGCTTCTCTGACCGGAGGATGGTACGTGGACCCTCATCAGAGTACCTTCTCGAACTGCTTTCATCTCTACCTCTGGATATTCCTCTTGGCCTTCCCCTTTCTTCTGTACATGGCCCTTCCTGCCAATTTAGTGGTGGCTGGTGTGTACTGCGCTGTGATAGCGGCCTTCTTCACGGCCATAAAAGCAGTGAACTTCCGGCTACATGCCATGTTTGACCTGGGTGAGATTGTGGAGAAGAGGCAGGCCTCGTTCAACACTGACCCCCACAGAGTGGAAGAAGGAGAGGAAGGCTCTGGCGCTCACGACGGAAGCCAACACAGGGACAGTGGTGTTGGTGTGGAAATGACGGTGTTCCGAAAGGTGAACTCCACCCCTCCTGTACGCTGCAGTTCCCAGCATTCGCTGTTTGGATTGAATCAGGTGTCGGAATTTTTACCACAGCTTGAAGACCCTGGAGGCTCAAAGGATATTAAGGAGCTCATGCAGGAGCAGGGCAGTAATAATGTGATCGTAACCTCTGCACATAGAGATGTCCTTCGACACAACTCTCAGGACAACACTAGTGTGGGGCCATCCTGTTTGGCTGGGGATTACAGAGGGCTAATTGGTGTGGGTGGTGTAATGTCTGGTGGGTTTAGTAGCCTGCACCCAGCAAACTGTCCTTCCATCCCGCCATCGCCCTCCAGCCAAGAAGATGGAGATGAGAAAGACCAGGTGAAGAATGGGGGTGTGGGGCAGCTATCCCCGCAGAGCCCCGATGGGGAGGGTCTAGGAGGCTACTCCCCCCTTGGGCCTTCAGCTGATTCTGAGAGCCTGGGAGATGCTCCTCTCAGCCCTCTTATAAAGAGTAGCTTGAGCGAGGAACTAAGTGAGAACTTGTTGGGTCTGGGCCTAGACCCTGTCGCTTTTGCCCCCGGTGCAGAGCAACCAGGCAGCCGCACTGGAGTGGCCCTGGCTGCAGGCTCCACTGACAGCTGCTTTAGTGGAGGTGGAGCGGCCACAGACAGAGAGACTCTCAGTACGGTCAGTAGCTACCGCAGCGAGAAAACAGACTCAACACAGCTTGAGAGCCCCTCGCTGGGCCAGACTCATAAACCCGTGTCTAACGCTCCTTCCACAGCTTTGCCTCAGGGTAAAGGCTCCTATCAGCAGCCTGCAGACGTGCTGCAGGGTGGCAGTGACACAGATGACCTGTCAGACAGCGTGCTGCTACGCTCACCCTCCAAAGAGCTCTCCTCTGGGCAGGGCCTAGACAGAACTCTGGTGGAGGGGGAGGACCTTCCCCCTTTGCTTGCAGACATTGCACAGCCCTCCTTGCAAGACTCGTCGCCGTCTAGCAGCGGGCCTTCCGAAACCTGCGATCTTGATGGTGGCATCCCTATACCCCCCCTTCCTCCTCCACGCCAGGCCAGCTCTGCACCGTCAGGTTTGGCACTGGGATTGGTCTGCTCAGAGCCTGCTCTGCCTGTCTCCGCCCCGTCCTACCTCCTAGCAGAGCCACCATCTCTGCAAGCTCAGCAACAGGTGGTGCGACCTAAAGATCTGAAGCTGCTACGTGCCGGGGGCAGTGTGGGTCACCGCCCCGGTCGCAGGAAAGCTCCCCGCAAACGAGGTGCTGCTGGCAGTAGCAGTTTCGACTGTGGCTCCTATCGCCGGCACCACAACCGTGGCCAACACAGAGACTACATCCCTGTACGCAGTCGGCTGGGTGCCAAAGCCTACAGCGAGAGCTTGTTTGAGGACTCCAGCGACGAAGACGATGGCAGCGATATGAGTGCAGATCTGCCGAATGCCGTCAACGCTTCTCAGCCTGGCCCCCCTCAGTTACCCAGTCCTGGAGAGGGGGAGGAGCCTGACAAAGTAGGACCCTCCCATTCTCGCAGTGCTCAGCGCTCAGCCAGCACAGCCAGTGCCAAGACTCATGCCAGAGTGCTCAGCATGGATGGGGCTGGTGGGGGTTCCAACAATACAGGGACCCTTGCATCTACTATGCTACCTTTACCACCTTCTTCCACTCCTGCCCCACGTCCACTCACCATCTCTAAATCAGACCTGGAGGCTCGGACAGTGCACTCAGAGGGTTTCTCCAGGGCACACCATAGGCTAGACTCACTTGGGGGCTCCTGGGCTGGGAACCAGACGGGCTGGAGGGCAGGAGAGCTGCTAGAAGAGGGGGCAGTAGGAGGAGCCCCAGAGGAGGGAAGTAAACGTGACTCTGTGAGCAGTGTGAAGAGGACGCAGGCCATTCGCAGGCGACATAATGCTGGTAGTAACCCCACCCCACCCCCTTCCGCCATGGGCTCTCCTCCTAGTCTACAGGACCTCCAGAGAGTCCGCACTTCCTCTCACTCCCGCACACGAACGCTCCCCTCCGCCCTGCACTTTGCCGCCTCATCCCTTCTGCTTCTGCCCCGCAGCGGTGTTCACGAGGCGTCCACCTTTGACGACACCTCAGAGGGAGCTGTGCACTACTTTTATGATGAGAGTGGAGTAAAGAGGTCTTATACTTTTGGGCCTGCTGGTGGAGGATATGAGGACCCAGTCCAGGAGCGAGAGCGACAGTCACAGTCCTCCAGCTTTACCTCCACTGATGTCCAGGAGGTGGCGCCAGTGCTGTCCATGCTGCAGCCCAGACCTGTGGTCCTCCAGGGTATGCAGGTTCGTGGGCTGCCCCTGGATATGCCAGAGTTCGACCTAGATCACGAGTCCCCTCATGAATCCCAGGAGAACACATTGATGATTGAGGAAAAGGCCAAGCCTAAACAGTATTACCGATTCTGGGTGCTGCCGGGCAAATGGTTAAGAGTTCGTTATGACAGGCTAGCATTGCTAGCCTTACTGGACAGGAATCGACGCGTTGGCGAGAATGTGTTTGCAGTGGTGTTGGCCAGCTTAGTGGCTTTCCTTGGCTTTTTGCTTCTTCGCCAGGGCTTCTTTAGGGACATCTGGGTTTTCCAGTTCTGTCTAGTCATTGCCAGCTGTCAGTACTCCTTGCTAAAGAGTGTACAGCCCGATGCAGCATCTCCGATGCATGGCCATAACTGGATCATCGTGTACAGCCGACCGGTGTATTTCTGCCTGTGTTGTGTGCTGATCTGGGTGTTTGACTTGGTCGGCCACTCAGAGAGTATGCGGCCTTTCACCCTCTATGGGGTCACCTTATTTTCTGCCCACTTTCTGCTCTGTGCTAGAGACATTCTCATAGTGTTCACCCTCTGTTTTCCCATCATCTTCCTGTTTGGGCTTCTACCTCAGGTCAACACATTCCTCATGTGTTTGTTGGAACAGGTGGACATGCACATTTTCGGTGGAACTGCCACCACAAGCCCCCTGTCTTCAGTTTATAGTCTGTTGCGTAGTATGTTGGTGGCGGCTCTGGTTTATGGATTTTGCCTTGGTGCCATCAATGCTCCGTGGGGAGAGGCACATGTCCCGGTGCTCTTCTCTGTGTTCTGTGGCCTCCTCCTGGCCTTGTCCTATCATCTGAGCAGACAGAGCAGCGACCCAACCATCCTCTGGTCTCTGGTCCGCTCTAAGTTCTTCCCAGAGCTGGAGAGCCGAACACCAGAAGAGCCCCCATTAGAGATTAAAGACCCTCTTCCAGAGAAACTGCATGACTCTGTGAAAGAGACTCTTCACTCAGACCTGGTCATGTGCCCTCTTATGGCCATTATCACCTTCGCCATTAGCGCCAGCACTGTCTTTATTGCTCTGCAGCCTGCTCTCAGTTTCGTCCTGTACATCTTGGCTGGGGTAGTGGGGTTTTTCACACACTACCTCCTACCTCAGCTCCGCAAACAGCTGCCCTGGTTCTGCTTAGCCCACCCTGTGCTTCGATCTCGAGAATACAGCCAGTTTGAGGTCCGAGATGCTGCTCAGCTCATGTGGTTTGAGAAGCTGTATGCTTGGCTGCAGTGTGTGGAGAAGTATTTCATCTACCCGGCAGTAGTGCTCAACTCCCTCACCACTGAAGCTCACACTGTCAGCCAAAACCCTGACAAACCTGGAGCCTATGGCCGTGCTCTGTTCATCTCAGTGGCTGGGATGAAGCTACTTCGTTCGTCCTTCTGTGTCCCGTCTCAGCAGTATGTCACTCTGTGCTTCACCGCCCTCTTCTTCCAATTCGACTACCCGCGCTTTTCACAGACCTTCCTCCTCGACTACTACTGCATGTCCATCCTCTTCAGCAAGATGTGGGATCTGCTGTATAAGCTGCGTTTTGTGCTGACCTACATTGCACCTTGGCAGATCACATGGGGTTCTGCTTTCCATGCCTTCGCTCAGCCATTCGCTGTTCCCCGTATCCTTTACCAATACTCAGCCATGCTGTTTGTGCAAGCTGTGTTTTCAGCTCTCTTTTCCACTCCCCTGAACCCTGTGCTGGGCAGTGCTGTTTTTGTTACGTCCTACACCCGACCTGTGAAGTTCTGGGAGAGAGACTACAACACCAAACGGGTGGATCACTCTAACACACGTCTGGCCACACAGCTGGATCGCAACCCTGGTGCTGATGACAACAACTTGAACTCCATCTTCTATGAGCATCTGACACGCTCTCTACAGCACTCGCTATGTGGGGACCTTCTGCTGGGCCGTTGGGGAAACTACAGCACAGGCGACTGCTTCATTCTGGCCTCCGACTACCTCAATGCTCTCGTACACATCATTGAGATCGGCAACGGCCTTGTCACTTTCCAGCTCAGAGGCCTGGAGTTCAGGGGAACGTATTGCCAGCAGAGGGAGGTGGAGGCGATCACTGAAGGGGTGGAAGAAGATGAAGGCTGTTGCTGCTGTGAGCCAGGTCATCTCCCCCACATGCTCTCCTTCAACGCTGCCTTTGGTCAGCGCTGGCTGGCCTGGGAGGTGGCTGCCACCAAATATGTGCTGGAGGGCTATAGCATTAGCGACAACAACGCAGCTTCCATGCTTCAAGTATTCGACCTGCGCAAGATTCTCATCACATATTATGTCAAGAGTATCATCTATTATGTGAGCCGCTCACCCAAACTGGAGGAGTGGTTGGCCAACGAGATGGTGCAGGAAGCGCTGCGGCCCTGCCTCAGCCCATCCTATGTGGATAGTGACCCCACCTTCAACCTGAACATAGATGAAGACTACGACCACCGTGCATCTGGCATCACTCCCTTTTCCTTCTGTCTGGTGTACCTGGAGTGGATCAAATATTGCAACAGCCGCAGAGAAACGCCAGTTGAGAGTGAGAAGGATTCCCCTCTGGTCACACTCTGTTTTGGGTTGTGTATTCTGGGCCGTCGAGCTTTGGGCACTGCCTCCCACAGCATGTCAGCAAGTTTGGAGCCTTTTCTCTACGGCCTTCATGCCCTGTTCAAGGGTGACTTTCGCATCACCTCTCCTAGAGACGAGTGGGTTTTTGCAGACATGGACCTGCTGAACAGGGTGGTAGCTCCAGGTGTACGGATGTCCCTCAAACTGCACCAGGATCATTTCACCTCTCCTGATGAGTATGAGGACCCAGTGGTGCTGTACGATGCCATCACAGCTAATGAAGAGAAGATGCTGATCTCTCACGAGGGTGACCCTGTTTGGCGCAGTGCTATTCTGGCCAATATGCCTTCTCTGCTCGCTCTCCGCCACGTTATGGATGACGGCAGCGACGAGTACAAGATCATCATGCTGAACAAACGCTTCCTCAGCTTCAGAGTCATCAAGGTGAACCGGGAGTGTGTGCGCGGGCTGTGGGCCGGACAGCAGCAGGAGCTGGTCTTCCTGCGGAACCGGAATCCTGAACGAGGAAGCATCCAGAACGCCAAGCAAGCCTTGAGGAACATGATCAACTCGTCCTGTGATCAGCCCATCGGATACCCCATCTACGTCTCCCCACTCACCACATCCTACGCCGGGGCCCATGTCCAGCTGCGCTCGGTCTGGGGAGGCCCCATCAGCCCTCACAACATTTACACCTGGTTCATCAGCAGCTGGGATAGGCTTCAGAAGGGATGTGGTGCCGGATGTAACAGTGGGGGGAACATTGAGGATTCAGACTGTGGTGGTGGCTCTACCTCTATCAGTAACAACCCTGCAGCTCATCCTCCTCAGAGTACAACATCCAGCATCCCTCAGCCTCATCCCACTACTGTACAGCCCTTGATGGGGACTGACAACCCCGTTGGACCTTCCTGGCCGCTGCATCCTCAGCCCCTTCCACTTGCCCTGCTCAGCCAATCAGAGGGCAGGATGGATGCAGGGCTGGTTAGCTCCTTGCAACGCACCTCTTCCATCCATGGGCTTTTGGGACAACACCTGTCCAGCTCCCAGCTGTCTTTCAGTGGTTCAGTGGCTCTGCCGCCTGCAGATCGCTTCTGCCCCAGTAGCCTGCAGGACAGTCTAAGTCATAGGGTGTCTCAGAGGGGCCTAAGCCTGGGTCAGGGCAGCGGGCTGCACTATGAGGCCCTATATAGTAAATGGAGTCTGCCAGGGAGGAAAGGATTCAACGGACCTGCTGTAATGGAAGGGGATGGTTCAGCATCACAGAGCATACGCACACAGCCTTCGCAGCCTCCCCTTCCTGTCCTGCCCACTGATGTCAGCCCAACACTGGATCCAGTGGGTGCTGTCATACCCTCTGAGACCACGCCCCTTACATCATCAGACCCACCCAGTGCACGGGAGGAGTCTACAGAACTGCCTTTACTTGAGCACCTCCGCTGAGCCTTCACAGCATGACCAGTACAGCCCATGGTCATCCTCACCATCCAGAGAGAGAGAGGGAGAGCTGGGAGGAATTCAAGCATCTTCAGGCAGTTCTGCATATATTAGGATGTTTCTCGCAAGTATACTTAAACACATCACCAGATACGGAAGCACACTAGAAGAGTGCCGCCTAAGTAATGAACTCTGGACTGAGCTCTCCTAAGCTTCTTTGGCTAATGTTTTGGCCTCCAGGTCCATAAGCCA

Function

symbol description
pcnx3 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human PCNX3 (pecanex 3).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000006_03164803_03183473.mRNA True 7589 mRNA 0.54 34 3164189 3183719

Neighbor

gene id symbol gene type direction distance location
CI01000006_03102358_03152576 NRXN2A coding upstream 11320 3102358 ~ 3152869 (+)
CI01000006_03016090_03016706 NA coding upstream 146875 3015137 ~ 3017314 (+)
CI01000006_02774064_02933983 NRXN2A coding upstream 230206 2774064 ~ 2933983 (+)
CI01000006_02665949_02677083 RASGRP2 coding upstream 486974 2665949 ~ 2677215 (+)
CI01000006_02616480_02616828 NA coding upstream 547350 2616480 ~ 2616839 (+)
CI01000006_03232003_03242938 NA coding downstream 48284 3232003 ~ 3243362 (+)
CI01000006_03294091_03298089 SLC29A2 coding downstream 110269 3293988 ~ 3298671 (+)
CI01000006_03319103_03319306 NA coding downstream 135384 3319103 ~ 3319520 (+)
CI01000006_03327370_03334117 RIN1A coding downstream 143651 3327370 ~ 3334702 (+)
CI01000006_03350988_03356496 NA coding downstream 167045 3350764 ~ 3357157 (+)
G41547 NA non-coding upstream 110269 2976694 ~ 3053920 (+)
G41538 NA non-coding upstream 131479 3022098 ~ 3032710 (+)
G41554 NA non-coding upstream 157874 2995770 ~ 3006315 (+)
G41570 NA non-coding upstream 419392 2737136 ~ 2744797 (+)
G41494 NA non-coding upstream 454174 2709526 ~ 2710015 (+)
G41605 NA non-coding downstream 14117 3197836 ~ 3198286 (+)
G41606 NA non-coding downstream 14843 3198562 ~ 3198765 (+)
G41614 NA non-coding downstream 65404 3249123 ~ 3250070 (+)
G41543 NA non-coding downstream 74330 3258049 ~ 3263442 (+)
G41555 NA non-coding downstream 84945 3268664 ~ 3336009 (+)
G41591 NA other upstream 324768 2836167 ~ 2839421 (+)
G41424 NA other upstream 503619 2645662 ~ 2660570 (+)
G41170 NA other upstream 1468368 1692065 ~ 1695821 (+)
G40768 NA other upstream 2671163 488407 ~ 493026 (+)
G40767 NA other upstream 2680854 360009 ~ 484185 (+)
CI01000006_03734862_03735227 BANF1, BANF1.S, BANF1.L other downstream 545511 3734554 ~ 3736035 (+)
G41996 NA other downstream 1933487 5117206 ~ 5124149 (+)
G43896 NA other downstream 2586370 5770089 ~ 5771775 (+)
CI01000006_06104927_06109730 NA other downstream 2924765 6104927 ~ 6109820 (+)
CI01000006_06122278_06122736 NA other downstream 2938316 6122035 ~ 6122751 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00015555 NA misc CM030132.1 CM030132.1 12434166 ~ 12462665 (+)