CI01000006_03232003_03242938


Basic Information

Item Value
gene id CI01000006_03232003_03242938
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 3232003 ~ 3243362 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000006_03232003_03242938.mRNA
TTCTTTCCTGGATGGAACCAATTTGTGCCACGGGAGTCGCTGCTCGTTTGAGGAGTGACTGGGATCGAAATAAGGGATATGGTCAGAACCATATGGCCCTGAAGTTTTTGGGCCAAGATTTTGAATACTTGCGTGAGCGCTGCCTTCAGAGTGGATGTCTGTTTGAGGATGAAACATTCCCAGCCCAGCAGTCTTCTTTAGGATTCAAAGAGCTGGGCCCTGGCTCTGCCAAAACCAAAGGTGTTCGCTGGATGAGGCCAACGGAGTTCTGCACTGATCCACACTTTATCGTAGATGGGGCCACACGCACCGACATCTGCCAAGGAGCTCTAGGAGATTGTTGGCTGCTGGCAGCCATTGCGTGCCTTACCCTCAATGAACCCTTGCTGCATCGGGTGGTGCCTCATGGCCAGAGCTTCCATCAGCAATATGCTGGAATCTTTCACTTCCAGTTTTGGCAGTTTGGGGACTGGGTGGATGTGGTGATTGACGACCGGCTGCCTGTCAGAGATGGGAAGCTGCTTTTCGTCCACTCAGCTGAGGGAGCAGAGTTCTGGAGCGCTCTGGTGGAGAAGGCATATGCAAAGTTGAACGGCTGCTACGAGGCTCTTTCTGGAGGCTCCACGTCTGAAGGGTTTGAGGACTTCACCGGTGGAGTGACAGAGATGTATGAGCTGAAAAAAGCTCCATCCAACCTCTTCAGCATCATCAGAAGAGCTGTGGAGAGAGGCTCCCTGATGGGCTGCTCGATAGATATCACAAGTTTCTTTGACATGGAGGCTGTCACCTTTAAAAAGCTGGTTAAAGGTCACGCCTACTCTATTACTGGAGTGGAGGAGGTGGAGTACAGAAAAAAACGCACAAAGCTGTTGCGCATCAGAAATCCTTGGGGAGAAGTGGAGTGGATGGGGCCCTGGAGTGATGAGTCAAGGGAATGGGGTGAAATCGACCCGTCTGTAAGGTCCCGTCTGCATAACTGCAGAGAGGATGGAGAATTCTGGATGTCATTCAGTGACTTCATGCGAGAGTTCAGCAGACTAGAGATCTGTAACTTGACAGCGGATGCACTACAGAGCAGCGAGGTGAAGAAGTGGAACACATCCCTGTATCCTGCAACATTTTGGATCAATCCCCAGTTTAAAATAGTCTTAAAGGAACCAGATACTGAGAGTCAAGATGACTGCACTTTTCTAGTGGCCCTGATGCAGAAGAATCGCAGAAAGTTACGTCGGGAGGGCAAAGACATGGAGACGATTGGATTTGCCATTTATGAGTGTCTGGGCCAGGTAGGTGTGCATCTGAAGCGTGATTTTTTCCTCAAACACACATCCAGCGCTCGTTCTGAGCTCTTCATCAACCTTCGAGAGGTGAGCTCGCGTTTCTGCCTGCCAGCAGGGGAATATATCATCGTCCCCTCCACCTTTGAGCCCCAGAAAGAAGGAGACTTTGTGCTGAGGGTCTTTTCAGAAAAGGCTGCTGACTCCCAGGAGCTAGATGATGAAATTTCCGCAGATGTACCGGAGGAGCCTGCGCTCCAGGAGAGTGACATTGACGAGGGCTTCAAGGCACTTTTCGCAAAGCTGGCAGGGCCGGAAATGGAGATCAATGTGTCCAAACTCCAGATGATTCTGAACCGGGTTGTTGGCAAACGCTTCAAGTTAACCAACAACCTGTTCCAGCTTATAATCCTGCGCTATGCAAAGCCGGACCTCAACGTGGACTTTGACAACTTTGTGGCTTGTCTGATCCGCCTGGAGACTATGTTTAAAACTTTTAAAGCAATGGACACTGATGAAGATGGATTGGTATCCTTCAGCTTTACCCAGGAAAGGAAAGCGAATATTGAGATGCAACAGCCAATAGAATATACTCAGAAAAAGCAGTGAACCTGATTTTTGTTTACTCTACATTTCAAAAGTTTGAGGTCAGAAAGATTTTTGTATTCAGTGAGGATGCATTAAAATGATCAAAATGGACAGTAAACAAATGTATAATGTTACAAAAGAATTTTTCAACATTTATTATAATAAATGTTTCTTGAGCACCAAATCAGCATATTAGAATGATTTCTGAACTAATGATGCTGAAAATTCAGCTTTGCCATCACAGGAATTGATTACATTTTGAAATATATCAAAATAGAAAAAAAGTTCATTTAAATTGTAATAATATTTCACAATATTTCTGTTTTTATTGTATTTTTGATCAAATAATTGAAGCCTTGGTGACTTCTTTCAAAAACAACTTACTGACCCCAAACTTTTGAATGGTAGTGTACAATAAAGTTTGCAAGAAATATTTAGGCAAAAC

Function

NR:

description
calpain 1

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K01367 CAPN1; calpain-1

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000006_03232003_03242938.mRNA True 2310 mRNA 0.45 17 3232003 3243362

Neighbor

gene id symbol gene type direction distance location
CI01000006_03164803_03183473 PCNX3 coding upstream 48284 3164189 ~ 3183719 (+)
CI01000006_03102358_03152576 NRXN2A coding upstream 79134 3102358 ~ 3152869 (+)
CI01000006_03016090_03016706 NA coding upstream 214689 3015137 ~ 3017314 (+)
CI01000006_02774064_02933983 NRXN2A coding upstream 298020 2774064 ~ 2933983 (+)
CI01000006_02665949_02677083 RASGRP2 coding upstream 554788 2665949 ~ 2677215 (+)
CI01000006_03294091_03298089 SLC29A2 coding downstream 50626 3293988 ~ 3298671 (+)
CI01000006_03319103_03319306 NA coding downstream 75741 3319103 ~ 3319520 (+)
CI01000006_03327370_03334117 RIN1A coding downstream 84008 3327370 ~ 3334702 (+)
CI01000006_03350988_03356496 NA coding downstream 107402 3350764 ~ 3357157 (+)
CI01000006_03412397_03437333 MARK2A coding downstream 169035 3412397 ~ 3437710 (+)
G41606 NA non-coding upstream 33238 3198562 ~ 3198765 (+)
G41605 NA non-coding upstream 33717 3197836 ~ 3198286 (+)
G41547 NA non-coding upstream 178083 2976694 ~ 3053920 (+)
G41538 NA non-coding upstream 199293 3022098 ~ 3032710 (+)
G41554 NA non-coding upstream 225688 2995770 ~ 3006315 (+)
G41614 NA non-coding downstream 5761 3249123 ~ 3250070 (+)
G41543 NA non-coding downstream 14687 3258049 ~ 3263442 (+)
G41555 NA non-coding downstream 25302 3268664 ~ 3336009 (+)
G41502 NA non-coding downstream 26602 3269964 ~ 3277004 (+)
G41513 NA non-coding downstream 40302 3283664 ~ 3288736 (+)
G41591 NA other upstream 392582 2836167 ~ 2839421 (+)
G41424 NA other upstream 571433 2645662 ~ 2660570 (+)
G41170 NA other upstream 1536182 1692065 ~ 1695821 (+)
G40768 NA other upstream 2738977 488407 ~ 493026 (+)
G40767 NA other upstream 2748668 360009 ~ 484185 (+)
CI01000006_03734862_03735227 BANF1, BANF1.S, BANF1.L other downstream 485868 3734554 ~ 3736035 (+)
G41996 NA other downstream 1873844 5117206 ~ 5124149 (+)
G43896 NA other downstream 2526727 5770089 ~ 5771775 (+)
CI01000006_06104927_06109730 NA other downstream 2865122 6104927 ~ 6109820 (+)
CI01000006_06122278_06122736 NA other downstream 2878673 6122035 ~ 6122751 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G1355305 NA non-coding NC_048580.1 CM023234.2 24741355 ~ 24741580 (+)