CI01000006_03734862_03735227 (BANF1, BANF1.S, BANF1.L)


Basic Information

Item Value
gene id CI01000006_03734862_03735227
gene name BANF1, BANF1.S, BANF1.L
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 3734554 ~ 3736035 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000006_03734862_03735227.mRNA
GTATATAATACATGCGGGTTTTATGAAATGCTCATATATAGTCTGTGTGGTAGGAGATCCGCTTATTTGTCAATAATGCATATTTATTTCGAGGGTATAGCTGAAACTTACAACAAAGTATGATATCTGAAGTTTTTTTTTTTTTTTTCGTTATGTTTGTTTTTTAATACGTTCAGTGTGTAGTATTTTCTTTTAACTTGTAGTATTAAGAAATCATGACTTTTAATACAAGATCTTGTTTCTCCTCTTTAAGCCATTGAATAGAGTCAACTTGAATTCCTGCAACCCTCTCTTAATACAAAACAACAATGTCGTCAACATCACAAAAACACAAGGACTTTGTGGCAGAGCCCATGGGGGAGAAGTCTGTGAATGCACTAGCAGGAATTGGGGAAGTTCTAGGAAAGAGATTGGAAGAGAAGGGCTTTGACAAGGCATATGTTGTCCTAGGACAGTTTCTGGTACTGAGGAAAGATGAGGAGTTGTTTCGGGAATGGTTGAAAGATACATGTGGAGCCAACACCAAACAGCAAGGCGACTGTTATGGCTGTCTGCGAGAGTGGTGTGACTCTTTCCTGTAGTTGACTCTAAAGTTGTTGTATCTTCATCCCCCCCCCATGTATACTGAATACATTTACCTCACACTATCAATTAGACTTTTTTGACATTTATTTTTGGATGTATTAATATTAACTCTTAGCCCAGAATTGTAGAAGCACTAGAAGGTCTCTAGATGGGTACACTTGTTAAATTATCACTGCTTCTTCTTTTTTCAAACATCATTCACACTGGATCTTTAGTTTTCGTGGAATGATACAAATTATCCAAAAATCCACTCATCATATGCAGTTCGATCCCAGACTGTACATATGTGCATACACCAGTAGTGCAAATACACATTTGCAGGGCACAACACAGATTTCACTTTGTTTATGATGCCATTTGCAGGTTTTAACTGGCAATGTGCCGCACTGCTATTAAGCTTTTTAAGGTTTGTGAACTTGTCACTGTTCTCTATATGTATTCTCCAAAGGATCCCATGCTGTGATATTGCCATATGGTTTTATGCTCCCCAACCCTTAAATTGCCTTA

Function

symbol description
banf1 Predicted to enable DNA binding activity. Predicted to be involved in chromosome condensation and chromosome segregation. Predicted to be located in chromosome and nucleus. Predicted to be active in nucleoplasm. Human ortholog(s) of this gene implicated in progeria. Orthologous to human BANF1 (BAF nuclear assembly factor 1).

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000006_03734862_03735227.mRNA False 1092 mRNA 0.37 2 3734554 3735738

Neighbor

gene id symbol gene type direction distance location
CI01000006_03607868_03614573 LRFN4A coding upstream 119619 3607255 ~ 3614935 (+)
CI01000006_03548703_03554763 PPP1R14BA, PPP1R14B coding upstream 179791 3548703 ~ 3554763 (+)
CI01000006_03483581_03526564 SLC8A4A coding upstream 207352 3483581 ~ 3527202 (+)
CI01000006_03446979_03447865 NA coding upstream 286638 3446979 ~ 3447916 (+)
CI01000006_03441003_03442001 NA coding upstream 291599 3440656 ~ 3442955 (+)
CI01000006_03744756_03759381 NA coding downstream 8586 3744324 ~ 3759825 (+)
CI01000006_03760594_03770397 NXF1 coding downstream 24537 3760275 ~ 3770797 (+)
CI01000006_03808166_03810807 NA coding downstream 72347 3808085 ~ 3810807 (+)
CI01000006_03837017_03839129 NA coding downstream 101279 3837017 ~ 3839251 (+)
CI01000006_03858455_03862082 RCE1B coding downstream 122717 3858455 ~ 3862368 (+)
G41523 NA non-coding upstream 8055 3725866 ~ 3726499 (+)
G41498 NA non-coding upstream 12885 3703620 ~ 3721669 (+)
G41672 NA non-coding upstream 90315 3642819 ~ 3644239 (+)
G41637 NA non-coding upstream 166579 3567598 ~ 3567975 (+)
G41635 NA non-coding upstream 174475 3559768 ~ 3560079 (+)
G41548 NA non-coding downstream 4456 3740194 ~ 3742496 (+)
G41716 NA non-coding downstream 40867 3776605 ~ 3776903 (+)
G41729 NA non-coding downstream 95166 3830904 ~ 3831126 (+)
G41732 NA non-coding downstream 104013 3839751 ~ 3840006 (+)
G41743 NA non-coding downstream 114055 3849793 ~ 3850026 (+)
G41591 NA other upstream 895133 2836167 ~ 2839421 (+)
G41424 NA other upstream 1073984 2645662 ~ 2660570 (+)
G41170 NA other upstream 2038733 1692065 ~ 1695821 (+)
G40768 NA other upstream 3241528 488407 ~ 493026 (+)
G40767 NA other upstream 3251219 360009 ~ 484185 (+)
G41996 NA other downstream 1381468 5117206 ~ 5124149 (+)
G43896 NA other downstream 2034351 5770089 ~ 5771775 (+)
CI01000006_06104927_06109730 NA other downstream 2372746 6104927 ~ 6109820 (+)
CI01000006_06122278_06122736 NA other downstream 2386297 6122035 ~ 6122751 (+)
CI01000006_07167131_07168925 NA other downstream 3431051 7166778 ~ 7168925 (+)

Expression


Co-expression Network