CI01000006_03760594_03770397 (NXF1)


Basic Information

Item Value
gene id CI01000006_03760594_03770397
gene name NXF1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 3760275 ~ 3770797 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000006_03760594_03770397.mRNA
TAATAAATCGGACACGAAAGCAAAGCAAGCGTTGTCCATTCTCTTGCATAGGCAGTCACTCATTAACTGTCGCTAGGTGGCGACGCTGACGTGGTGTGCAAACAGTCCACTGAGTATTCGAAGAAGAATCTGGCGCAGCTGCGTCTGAGACGGATTCTTCTCACACAAAGCTGTCAAGAAAGGATCTCTTCTGATCTCGCAGCCTTCAGAACGTTTTTCTTAATTTCTCTTGATTTCGTTTTATATACATAAAGTAGGAAAATAACACGTGGGAATCCTATATTTTAAGTTTAAAGTAGCCTAAAAGCCTTCTTTAAAGATGGCGACAGCGGACGGTTCGCGCTACTACAGTGAGCATGATGACCGTGTCGGTGGACCAAAGCATCGCAACCGTAAAGGCAGAGGCCCTTTCAGAGCCCCCATGTACAGCGATCAGATTTCTCGGCCAAGGCAGCGAGGCGGTCACAATGGTGGTGGAGGTGGAGGTGGAGGCCCTGGTCCCCGGTCGAGACTGCATGATGATGATGGAGATGTGACCATGGCGGAAGGTCCACAAGACAGCGGCTCCCAGCGCAGATTCAATCCATATGGCCGGCCACAGAATCGGCGTGAGGAACGCAATCGCAAAGGTGGACGAGGTGGCGGCGGAGGAGGTGGAAATGAAGATAGAGGTGGCAATCGATATGGAGGCAGAGGTGGTGGAGGTGGCAGCGGTTCTGATGGAAGTCGTAGCAAGAACTGGTTTAAAATGACTATTCCTTTCGGAAAGAAATATGACAAAGATTGGCTTCTGTCTTCACTTCAGAGCGTATGTTCAATGCCATTCCATGCAGTTCATTATCACACTGATGGCAACAAGGCCCAGTTTTATATTGAAGACTCCACAACCGCTAATGCTTTGTTTAAAGTGTCACGGAAAATAACAGACAAAGACGGATATAAGGTGACTGTTATTATGAACAGCTGCCCACCACCAACTTTGATTCACACTGATCTGAAGACCACGGATATGGAGCATTTGAAGCAATGCATGGCCAAACGCTTTGACGGATCACAGCAGGCTCTTGATCTGAACAACATCAGAGTCGATCCAGATTTGGTTTCTCAAAATATTGAGGTTACTTTAAATAGGAGGAACTCCATGCTGGGGGTTATCAAAATAATTGAGGAGAACATTCCTGAGCTGGTTTGTCTGAACTTGAGTAACAACCGGTTATACAGGCTGGATGACTTGGCAGATATTGTCAACAAAGTTCCCAACCTGAAGATTCTCAATCTGTCACACAATGAGCTGAAGACGGAGAGAGAACTTGATAAACTGAGTGGTCTGAAGCTGGTGGATCTCTCATTGGAGGGAAATCCTCTGTGTGGCCACTTCAAGAACCAGATCGACTATGTCAGTGCCATTCGGGAACGATTCCCCAAGCTGCTCAAACTGCCTAGCTACTTCTGCTCTGAAGAGATCAAGACCATCATCCATTGCTTCCTGCAACAGTATTACAGCATATATGACTCAGGAAACAGACAGCCCCTGCTAGACGCCTACCATGACGGAGCATCTTTCTCCCTCAGCATTCCCTTCATGGTTCAAAACCCTTCAAAATATAGTTTAGGGGATTACCAGAAAGACAGTCGCAATATCAAGCGCATGAAAGACCCCACTACACGTTTTCGTTTGATTAAACACACACGATTAAATGTGGTGGCTTTCCTGAACGAACTCCCCAAAACCCAGCACGACATCGCCTCCTTTATCGTAGATGTCAACACCTACACAGCTACACTGTTGGCATTTACAGTCAGTGGAGTTTTCAAAGAAATGGACGGCAAGTCCCGAGAAACATACAGAGCATTCTCTCGAGTATTCATCGCTGTTCCTGCTGGAAATGGTCTATGCATTGTGAATGACGAGCTGTTCGTTCGAAACGCCACTACAGAGGAAATTCGCCGTGCTTTCGTTGCCCCCGCCCCCACACCATCCAGCAGCCCTGTGCCCACTCTGTCCGCCCCTCAACAAGAAATGCTTGCTGCCTTCTCACTAAAGTCTGGCATGAACCTAGAATGGTCTCAAAAATTCATACAAAGATGGACAGTTAAGGTCAGACTTGCTTGTTATTGCAGGTGCCTACAAGACAACGATTGGGATTTTGACAGAGCTGCTCAGATCTTCACCGGCCTAAAGGCACAAGGAAAGATTCCAGATGTTGCATTTGTCAAATGAAGAGTTACTGTTGTTGATTTTACGGAAACTCTGAACCACAAGGTGCCTTCCTGATTCTATCCTCCCATCTAAAATGAAATCGTGTCTATTATTATTATTAGCGCTTATATATTTTTTTCCCTGTAATTTTTTTTTCTCTAAAGAGAGTTATCCACAAGATTTTTTTTTAATAAAAATAAAAGGTTCACAGAGCAAACTTTTAAGACAAAAAGAGGAAAGAGAACCATGAAAAAATGACTCAGGAAGACACTAAGACCAATTTTTTTTCCACTACTTTTTTTTTTTTTTTTTTTGGGGGGGGGTGGTGAATACCCACCCTCTCCCCAACCTACCTTTGTGGTTCAAGTTTTCTGTACATTTTAACTGCGTTGTCATATTCAATCTGGGACAGATATGGCAA

Function

symbol description
nxf1 Enables RNA binding activity. Involved in mRNA export from nucleus. Located in cytoplasm and nuclear speck. Colocalizes with transcription export complex.

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K14284 NXF, TAP, MEX67; nuclear RNA export factor

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000006_03760594_03770397.mRNA True 2621 mRNA 0.45 20 3760275 3770797

Neighbor

gene id symbol gene type direction distance location
CI01000006_03744756_03759381 NA coding upstream 450 3744324 ~ 3759825 (+)
CI01000006_03734862_03735227 BANF1, BANF1.S, BANF1.L coding upstream 24537 3734554 ~ 3736035 (+)
CI01000006_03607868_03614573 LRFN4A coding upstream 145340 3607255 ~ 3614935 (+)
CI01000006_03548703_03554763 PPP1R14BA, PPP1R14B coding upstream 205512 3548703 ~ 3554763 (+)
CI01000006_03483581_03526564 SLC8A4A coding upstream 233073 3483581 ~ 3527202 (+)
CI01000006_03808166_03810807 NA coding downstream 37288 3808085 ~ 3810807 (+)
CI01000006_03837017_03839129 NA coding downstream 66220 3837017 ~ 3839251 (+)
CI01000006_03858455_03862082 RCE1B coding downstream 87658 3858455 ~ 3862368 (+)
CI01000006_03883341_03885377 NA coding downstream 111992 3882789 ~ 3886026 (+)
CI01000006_03888048_03891012 NA coding downstream 116576 3887373 ~ 3891478 (+)
G41548 NA non-coding upstream 17779 3740194 ~ 3742496 (+)
G41523 NA non-coding upstream 33776 3725866 ~ 3726499 (+)
G41498 NA non-coding upstream 38606 3703620 ~ 3721669 (+)
G41672 NA non-coding upstream 116036 3642819 ~ 3644239 (+)
G41716 NA non-coding downstream 5808 3776605 ~ 3776903 (+)
G41729 NA non-coding downstream 60107 3830904 ~ 3831126 (+)
G41732 NA non-coding downstream 68954 3839751 ~ 3840006 (+)
G41743 NA non-coding downstream 78996 3849793 ~ 3850026 (+)
G41499 NA non-coding downstream 79672 3850469 ~ 3853876 (+)
G41591 NA other upstream 920854 2836167 ~ 2839421 (+)
G41424 NA other upstream 1099705 2645662 ~ 2660570 (+)
G41170 NA other upstream 2064454 1692065 ~ 1695821 (+)
G40768 NA other upstream 3267249 488407 ~ 493026 (+)
G41996 NA other downstream 1346409 5117206 ~ 5124149 (+)
G43896 NA other downstream 1999292 5770089 ~ 5771775 (+)
CI01000006_06104927_06109730 NA other downstream 2337687 6104927 ~ 6109820 (+)
CI01000006_06122278_06122736 NA other downstream 2351238 6122035 ~ 6122751 (+)
CI01000006_07167131_07168925 NA other downstream 3395992 7166778 ~ 7168925 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_019641 nxf1 coding NC_007132.7 CM002905.2 26665014 ~ 26677834 (-)