CI01000006_05729706_05734532


Basic Information

Item Value
gene id CI01000006_05729706_05734532
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 5729268 ~ 5734668 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000006_05729706_05734532.mRNA
CTTTAAAAGCCCCGCTTGAACTGTAAAGATTTACACCGCCACCCCTCTGATCTGGAATCTGCCTTCTGTCCTCACTGTCAAGACAAGAGATGTATCGATTAAAGACTTAACACTAGGTTGCATCATGTGTATTGGACTTGCGCACCTTGACTGCAGCTCTGTATCGTCAGAGCCTTGCTGACGAAAAGATGTTTGTTGGTTCTTGTATCAGAGCAGTCCATCAGGTAAATTTCGCCAACAAAGTCTTATTTGATTCACTTCTGTCCGCCTGTATCTGAGGCATCACCTACACAGGGATCGGGTTCGGTACTCGTGTGTGGAAAATAAGAGACTTTTTCATTCTCACATGAATACGGAATAAAAGTAAACACAGACAGGCAGACAGCTCTGCCCCATATTATTAAAGCGATAGGCATCTGGCATGCCCGGTAAAAAGACATGACGGTTGCGCACAGGGCTTTTTTCGCTGAGGTGCTTTTCACTGGCCGCTTTCTTATCTGCTTTCTACAACTGGAGATGGAAGGATTACAGACAGAGCAGAGCGCTGCAAGCCCACTGTGGTGCCAGGCACACAATACGGACAGGGTCAGAGTTCATGGGGCAGAGGTCTGCGTGCGGGAGGTAGGAATGGGAGGGTCTCAGGGGTCCAGTGTTGACCCCAACCTTTCGGACCATTGTCCTGAGGAGCACAAAGGACGGTCGTCCTCTAGTTTGGCCTACCTCAAGCTGAGTTTGACAGAGGCTTTGAATTTGGTTGACACAACAGTGAACAATCAAATGTGTTCTTCAGACTACACTAGAGTCTCAATCACCTGCATTAGGAGCACATCACTCTCCATCCACCTTACAGAGTTCGCTTCAGTTCGGCAGGCTGAAATAGAGTTGTGCTGTGGAAATACTGATGTGAGAGTGTGAAGTGGCCACAACTCCTCTCCCCCTCTTTCCTTTGTCTGTTGGTTTCTTGCGCTCCCACTATTGTGATGAGGTAATGGGTCCCTCATTCTGTCCCTGTCAGCTGCTTTCTGTTGTCTAATGTGTGGAATGGTTAAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000006_05729706_05734532.mRNA True 1051 mRNA 0.48 3 5729268 5734668

Neighbor

gene id symbol gene type direction distance location
CI01000006_05719079_05723838 NA coding upstream 5103 5719079 ~ 5724165 (+)
CI01000006_05617900_05693346 NCAM1, NCAM1A coding upstream 35922 5617900 ~ 5693346 (+)
CI01000006_05469329_05478118 NA coding upstream 250639 5469017 ~ 5478629 (+)
CI01000006_05380873_05439031 NA coding upstream 289751 5380319 ~ 5439517 (+)
CI01000006_05276965_05313266 NA coding upstream 415038 5276756 ~ 5314230 (+)
CI01000006_05739275_05746584 NA coding downstream 4140 5738808 ~ 5747186 (+)
CI01000006_05821114_05830402 ZBTB16, ZBTB16A coding downstream 85770 5820438 ~ 5830561 (+)
CI01000006_05870762_05888691 USP28 coding downstream 136094 5870762 ~ 5889135 (+)
CI01000006_05893735_05901666 ZW10 coding downstream 158863 5893531 ~ 5902022 (+)
CI01000006_05903309_05926132 DLAT coding downstream 168641 5903309 ~ 5926132 (+)
G43942 NA non-coding upstream 286345 5442465 ~ 5442923 (+)
G43934 NA non-coding upstream 300950 5428100 ~ 5428318 (+)
G43933 NA non-coding upstream 301184 5427850 ~ 5428084 (+)
G42224 NA non-coding upstream 331127 5397778 ~ 5398141 (+)
G42223 NA non-coding upstream 331563 5397430 ~ 5397705 (+)
G43903 NA non-coding downstream 37213 5771881 ~ 5773949 (+)
G43898 NA non-coding downstream 54753 5789421 ~ 5790914 (+)
G43887 NA non-coding downstream 58249 5792917 ~ 5804161 (+)
G43970 NA non-coding downstream 337729 6072397 ~ 6072706 (+)
G43988 NA non-coding downstream 375498 6110166 ~ 6110406 (+)
G41996 NA other upstream 605119 5117206 ~ 5124149 (+)
CI01000006_03734862_03735227 BANF1, BANF1.S, BANF1.L other upstream 1993290 3734554 ~ 3736035 (+)
G41591 NA other upstream 2889847 2836167 ~ 2839421 (+)
G41424 NA other upstream 3068698 2645662 ~ 2660570 (+)
G41170 NA other upstream 4033447 1692065 ~ 1695821 (+)
G43896 NA other downstream 35421 5770089 ~ 5771775 (+)
CI01000006_06104927_06109730 NA other downstream 373816 6104927 ~ 6109820 (+)
CI01000006_06122278_06122736 NA other downstream 387367 6122035 ~ 6122751 (+)
CI01000006_07167131_07168925 NA other downstream 1432121 7166778 ~ 7168925 (+)
G44872 NA other downstream 1621684 7356352 ~ 7387884 (+)

Expression


Co-expression Network