CI01000006_06974359_06976736


Basic Information

Item Value
gene id CI01000006_06974359_06976736
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 6973224 ~ 6976872 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000006_06974359_06976736.mRNA
ATGGCGGAGTCAAACGGGATGACAGATGTCCAGTTGATTCAGCAGCTGGCTTTGCTGGGCTGGCTGAAGACCGACAGTGTGCAGTGTAAAGAGCTGTACACTGCTGTCACTGGGATGCAGGTGGCCCGTGAGGTTCTGGACAGACTCTCTGGGCAAAGCCAAATAGATGCTTACAGGAGGGAATGCATCCTGAGTGTAGCTGACTTTGTGAAGAAGAACCCCAGAGCTTCCCAACGAGAGCTCAATGCCGAGGTTGAGAAGAACGTGCTGCTGTTTGCCTCTAGAGTGCAGGCTCTGTAGATACTGGCCACTGAACGAATCGCTGCAGCCGTGACCTTCATTGTTCCTACTGACCAAAATATCTCCTTTTTTTCTTTCTGCTTTTATCTTTATGTATTTTGTCTTTATCTAAACTAATATGCTTGTTTTTCATAATCTCGAATAATTATTTTTGAGTCAGTGAGTCTTTATAGTAATGCTGAATTTTACCTATTTTACATGATTTCAAATGTACTGTTTCTGTAATATTCACATAAAGTTAGACTATACATAACATATAGTCACTTATCACTTAAAACTTGAGTTTTTATATTTAAAAGATGATATTTTAATCTTATATTTCAAATCTGAAATAAA
>TU51020
AGTAGAACAAGCTAGTGTGTAAACAGGAAGATCATGTAAGCTGTGTCACAAAAGCAAACAACGAAATTTTAGCTGTAGTTTATAGTTAACTGGTTAATATTAATCTCATACAATAATAACTTGTCAATAATAAAGTATGGCGGAGTCAAACGGGATGACAGATGTCCAGTTGATTCAGCAGCTGGCTTTGCTGGGCTGGCTGAAGACCGACAGTGTGCAGTGTAAAGAGCTGTACACTGCTGTCACTGGGATGCAGGTGGCCCGTGAGGTTCTGGACAGACTCTCTGGGCAAAGCCAAATAGATGCTTACAGGAGGGAATGCATCCTGAGTGTAGCTGACTTTGTGAAGAAGAACCCCAGAGCTTCCCAACGAGAGCTCAATGCCGAGGTTGAGAAGAACGTGCTGCTGTTTGCCTCTAGAGTGCAGGCTCTGTAGATACTGGCCACTGAACGAATCGCTGCAGCCGTGACCTTCATTGTTCCTACTGACCAAAATATCTCCTTTTTTTCTTTCTGCTTTTATCTTTATGTATTTTGTCTTTATCTAAACTAATATGCTTGTTTTTCATAATCTCGAATAATTATTTTTGAGTCAGTGAGTCTTTATAGTAATGCTGAATTTTACCTATTTTACATGATTTCAAATGTACTGTTTCTGTAATATTCACATAAAGTTAGACTATACATAACATATAGTCACTTATCACTTAAAACTTGAGTTTTTATATTTAAAAGATGATATTTTAATCTTATATTTCAAATCTGAAATAAAGGTGCTCATATTTGATGTCATGTGTGTCATCAAAGTGCATTATACATAATGTTGAACAATGACTAATTAATTTACAGTAGTGTGAAGGCCAGTTTTGAGAGCACTGATTTTAACACATAGATGACAAAGAAAGACAAAGAGAACTGTCAGGTGGATGAAGCGACAAGAGAGGAAAAATAAGAGGACAGAGACAGACTCCATAATGAGCTATCACTATATTCATCACACAGCACCTGTGATGAATTACATTATGCTGATCACACTTCTCAGATCTCTTGATGACTTTAAAGACAGTGTAGCACTCAGCCCAAACCGATGATTAGCGCTGCTGCTTTTGGAATAATACAAACGCAAGACATGGCTTTCGCTGTCTTTTTGGTTTTGCAACCACGGTTGCCAATACACTTGTCTTCCAATGAGGACAAAGTTTATGAATAAAATACTGCACACTCTTTTGATATAGCGCTTGTCTGTCTCCACTGCACCTGGGCACTTACAAGCAATGACCAGTACTCTAATGATGGGGAATACAGTCTTATGAGCTGGCAACCAAGATGAAAGGCAAGGGTGGGCTGGTCAGAGAGAACAAAGCAATGTCGTCTCAGCCATCTAAGCACATCTCACAATAGAAAGAGAGTACCATGGCTATATTTTTGTCTGTCAACATCAAACAAAGCAATATTTTAATGTCAGTAAAGCAACAAGCAAATGGTGGTCTGTCAGTTGTTTAAAGCTTTTAAATTGTACTTGTTGGATGTCCTTGAAGTTGTATTTTCAGAGAGACTGTAATGGGGTAGGG
>TU51023
AGTAGAACAAGCTAGTGTGTAAACAGGAAGATCATGTAAGCTGTGTCACAAAAGCAAACAACGAAATTTTAGCTGTAGTTTATAGTTAACTGGTTAATATTAATCTCATACAATAATAACTTGTCAATAATAAAGTATGGCGGAGTCAAACGGGATGACAGATGTCCAGTTGATTCAGCAGCTGGCTTTGCTGGGCTGGCTGAAGACCGACAGTGTGCAGTGTAAAGAGCTGTACACTGCTGTCACTGGGATGCAGGTGGCCCGTGAGGTTCTGGACAGACTCTCTGGGCAAAGCCAAATAGATGCTTACAGGAGGGAATGCATCCTGAGTGTAGCTGACTTTGTGAAGAAGAACCCCAGAGCTTCCCAACGAGAGCTCAATGCCGAGGTTGAGAAGAACGTGCTGCTGTTTGCCTCTAGAGTGCAGGCTCTGTAGATACTGGCCACTGAACGAATCGCTGCAGCCGTGACCTTCATTGTTCCTACTGACCAAAATATCTCCTTTTTTTCTTTCTGCTTTTATCTTTATGTATTTTGTCTTTATCTAAACTAATATGCTTGTTTTTCATAATCTCGAATAATTATTTTTGAGTCAGTGAGTCTTTATAGTAATGCTGAATTTTACCTATTTTACATGATTTCAAATGTACTGTTTCTGTAATATTCACATAAAGTTAGACTATACATAACATATAGTCACTTATCACTTAAAACTTGAGTTTTTATATTTAAAAGATGATATTTTAATCTTATATTTCAAATCTGAAATAAAGGTGCTCATATTTGATGTCATGTGTGTCATCAAAGTGCATTATACATAATGTTGAACAATGACTAATTAATTTACAGTAGTGTGAAGGCCAGTTTTGAGAGCACTGATTTTAACACATAGATGACAAAGAAAGACAAAGAGAACTGTCAGGTGGATGAAGCGACAAGAGAGGAAAAATAAGAGGACAGAGACAGACTCCATAATGAGCTATCACTATATTCATCACACAGCACCTGTGATGAATTACATTATGCTGATCACACTTCTCAGATCTCTTGATGACTTTAAAGACAGTGTAGCACTCAGCCCAAACCGATGATTAGCGCTGCTGCTTTTGGAATAATACAAACGCAAGACATGGCTTTCGCTGTCTTTTTGGTTTTGCAACCACGGTTGCCAATACACTTGTCTTCCAATGAGGACAAAGTTTATGAATAAAATACTGCACACTCTTTTGATATAGCGCTTGTCTGTCTCCACTGCACCTGGGCACTTACAAGCAATGACCAGTACTCTAATGATGGGGAATACAGTCTTATGAGCTGGCAACCAAGATGAAAGGCAAGGGTGGGC
>TU51019
AGTAGAACAAGCTAGTGTGTAAACAGGAAGATCATGTAAGCTGTGTCACAAAAGCAAACAACGAAATTTTAGCTGTAGTTTATAGTTAACTGGTTAATATTAATCTCATACAATAATAACTTGTCAATAATAAAGTATGGCGGAGTCAAACGGGATGACAGATGTCCAGTTGATTCAGCAGCTGGCTTTGCTGGGCTGGCTGAAGACCGACAGTGTGCAGTGTAAAGAGCTGTACACTGCTGTCACTGGGATGCAGGTGGCCCGTGAGGTTCTGGACAGACTCTCTGGGCAAAGCCAAATAGATGCTTACAGGAGGGAATGCATCCTGAGTGTAGCTGACTTTGTGAAGAAGAACCCCAGAGCTTCCCAACGAGAGCTCAATGCCGAGGTTGAGAAGAACGTGCTGCTGTTTGCCTCTAGAGTGCAGGCTCTGTAGATACTGGCCACTGAACGAATCGCTGCAGCCGTGACCTTCATTGTTCCTACTGACCAAAATATCTCCTTTTTTTCTTTCTGCTTTTATCTTTATGTATTTTGTCTTTATCTAAACTAATATGCTTGTTTTTCATAATCTCGAATAATTATTTTTGAGTCAGTGAGTCTTTATAGTAATGCTGAATTTTACCTATTTTACATGATTTCAAATGTACTGTTTCTGTAATATTCACATAAAGTTAGACTATACATAACATATAGTCACTTATCACTTAAAACTTGAGTTTTTATATTTAAAAGATGATATTTTAATCTTATATTTCAAATCTGAAATAAAGGTGCTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000006_06974359_06976736.mRNA False 636 mRNA 0.39 3 6974023 6976736
TU51020 False 1571 TUCP 0.41 3 6973224 6976872
TU51023 False 1345 TUCP 0.38 3 6973450 6976872
TU51019 True 779 TUCP 0.38 3 6974016 6976872

Neighbor

gene id symbol gene type direction distance location
CI01000006_06967454_06970828 NA coding downstream 2633 6966345 ~ 6971390 (-)
CI01000006_06947556_06950105 RTN2B, RTN2 coding downstream 23918 6947499 ~ 6950105 (-)
CI01000006_06865010_06869448 NA coding downstream 104146 6864664 ~ 6869877 (-)
CI01000006_06815723_06816988 B9D2 coding downstream 156844 6815428 ~ 6817179 (-)
CI01000006_06809736_06812112 NA coding downstream 161333 6809545 ~ 6812690 (-)
CI01000006_06978333_06978644 SDHAF1 coding upstream 1438 6977644 ~ 6978986 (-)
CI01000006_06980488_06985488 QPCTLB, QPCTL coding upstream 3442 6980178 ~ 6985488 (-)
CI01000006_06992398_06997996 NA coding upstream 15559 6992295 ~ 6997996 (-)
CI01000006_07001011_07007919 ITPKCA coding upstream 23172 6999908 ~ 7008739 (-)
CI01000006_07009672_07015471 CCDC61 coding upstream 32145 7008881 ~ 7015471 (-)
G44892 NA non-coding downstream 10472 6945660 ~ 6963551 (-)
G44896 NA non-coding downstream 11237 6938698 ~ 6962786 (-)
G44936 NA non-coding downstream 18516 6954715 ~ 6955507 (-)
G44925 NA non-coding downstream 37140 6936457 ~ 6936883 (-)
G44737 NA non-coding downstream 120942 6852844 ~ 6853081 (-)
G44946 NA non-coding upstream 99561 7076297 ~ 7076498 (-)
G44947 NA non-coding upstream 101482 7078218 ~ 7126301 (-)
G44948 NA non-coding upstream 103517 7080253 ~ 7080929 (-)
G44958 NA non-coding upstream 128139 7104875 ~ 7153034 (-)
CI01000006_04560607_04560993 NA other downstream 2411955 4559509 ~ 4562068 (-)
G43549 NA other downstream 2618595 4352510 ~ 4355428 (-)
G43102 NA other downstream 4040039 2908451 ~ 2933984 (-)
CI01000006_02624725_02626124 COX8A other downstream 4347837 2624436 ~ 2626776 (-)
G42934 NA other downstream 4391817 2523776 ~ 2582206 (-)
CI01000006_07500281_07507754 NA other upstream 526409 7500246 ~ 7507976 (-)
CI01000006_10453630_10483241 NA other upstream 3506120 10453613 ~ 10484006 (-)
G47658 NA other upstream 4054175 11030911 ~ 11033127 (-)
CI01000006_11651067_11653761 SMD3, SNRPD3, SNRPD3L, MGC52856 other upstream 4673627 11650363 ~ 11654424 (-)
CI01000006_12348300_12348961 GLRX other upstream 5357673 12347180 ~ 12349383 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_018859 sdhaf1 coding NC_007132.7 CM002905.2 21339311 ~ 21347380 (+)
tiger barb (Puntius tetrazona) G144077 NA unknown NC_056719.1 CM032088.1 5508665 ~ 5510746 (+)