CI01000006_07312005_07327873 (EFNA5A)


Basic Information

Item Value
gene id CI01000006_07312005_07327873
gene name EFNA5A
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 7311793 ~ 7327901 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000006_07312005_07327873.mRNA
ATGCCCAGACTGCCTCAGTAGAGGGAAAATGAACTTTCCAGAAGGGTTCCTTCCCAGAATGCTATTTGGCTATGCTGTCTGTACAACACAATATGTGGTGCATCACTGTTTGTTGGCTCTCGGCCCTGCAGGGTGTGTTGGCCGGCTGGCTGATGGACGAGGCTCTGACAGGGCCGCTGAGGGTTCTGATGAACTGAGCTGGATGGGGGCGATTGAGAGCACCAGTCTCACAGCGCTATGCCACCCTGATGATACATTAAAGTGTAACTTGCTTGAAAAACACCCTGAGCGGCTTTGCCCAAGGCACTGTAAAACGACCCGGGCAGTTCGAGGCGCGCAATGGCCCCTCTGGGAGAGGTTCTACCGAGGAGACTACCACATTGACGTATGCATCAACGATTATTTGGACGTATACTGTCCCCACTACATGGACACGGTCCCTGAGGAGAGGACGGAGCGCTACGTCCTCTACATGGTCAACTACGACGGCTACAGTTCTTGCGACCACACAGCGAAAGGTTTCAAGCGCTGGGAGTGCAACCGGCCTCACTCGCCTAATGGGCCGCTGAAGTTCTCTGAGAAGTTTCAGCTCTTCACACCGTTCTCATTGGGTTTCGAATTTCGGCCAGGCAGAGAATATTACTATATCTCATCTACCGTCAGTGAAAACGGGAGACGGAGCTGCTTGAGGCTGAAAGTTTTCGTCAGACCTTCGAACAACTGTGAGAAAAGTCACGACCGCGTCGTCAAGATCAATGATGGAAGCATCAACTCTATAGAAAATAATAATGGTTCGTACTACGGAACGAGTCATGAATCTGCCGAACCATCCCGAGGTGATGTCAACGGCGCCGGACGCGTTCAGACTGTAGGGCTCTTGTTGGCCTCAGCGCTGGTTCTTTTGGCTTCACTGTCCTCCTTATAGCATCCCATATGTGCGCAGTGACACACCTAAAGTATACAGGAGGACTCGTGATCGAGCACTTTTAAGGAACATTTGAGATCTTTCTCTCAACTGAAATGTAATTTCTCGCGCAGGAAGACGCGACGATTTGTGCTTCTCATCTTATGGCGATACAACTGGATGGTTTTCAATGAACAAAATCCCCACCCCACAGTCTTGTACACACGAATAAA
>TU51211
TGAAACTCTAGATGGCACAGGCTGATGATAATTACAGCATTAACTACTTGGCACAAGCTGATTGGTTCATGTCACTTCCGCAGCCAATGAGCTTGTTGTTCACACATTTAAATGGCTGGTTACATTCACTGTAGCAGTTTGCAGCGCGCTTTAGAGTTAGTTTACAAAAATCTAGGTGAATCACAAACCAGCCTAATTATACAGGGCTCCTTTACGAGCGATTAGTTGTCTTTTTAGGCCAGACAGTCTCCATACCTTCCTCGCCCACTCTTTTCTCTCATGCCTTATAGTCTCACAGCGCTATGCCACCCTGATGATACATTAAAGTGTAACTTGCTTGAAAAACACCCTGGTAATACTCCCAC

Function

symbol description
efna5a Predicted to enable ephrin receptor binding activity. Predicted to be involved in several processes, including axon guidance; ephrin receptor signaling pathway; and regulation of actin cytoskeleton organization. Predicted to be located in membrane. Predicted to be anchored component of membrane. Predicted to be active in plasma membrane. Predicted to be anchored component of external side of plasma membrane. Is expressed in several structures, including anterior neural keel; immature eye; nervous system; neural plate; and neural tube. Orthologous to human EFNA5 (ephrin A5).

GO:

id name namespace
GO:0046658 anchored component of plasma membrane cellular_component

KEGG:

id description
K05462 EFNA; ephrin-A

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000006_07312005_07327873.mRNA False 1137 mRNA 0.50 8 7311793 7327901
TU51211 True 365 lncRNA 0.43 1 7326227 7326591

Neighbor

gene id symbol gene type direction distance location
CI01000006_07231215_07235809 OXCT1.L, OXCT1B, OXCT1, OXCT1A coding downstream 75984 7231109 ~ 7235809 (-)
CI01000006_07223113_07228278 C7B, C7 coding downstream 83515 7223007 ~ 7228278 (-)
CI01000006_07200554_07201795 HTR1AB, HTR1A coding downstream 109895 7200311 ~ 7201898 (-)
CI01000006_07170860_07172808 NDR1 coding downstream 138901 7170624 ~ 7172892 (-)
CI01000006_07032358_07058942 RICTORB, RICTOR coding downstream 252851 7031186 ~ 7058942 (-)
CI01000006_07358910_07359982 NA coding upstream 30451 7358352 ~ 7360452 (-)
CI01000006_07444688_07448103 NA coding upstream 116688 7444589 ~ 7448103 (-)
CI01000006_07449425_07454936 NA coding upstream 121524 7449425 ~ 7455306 (-)
CI01000006_07456715_07457332 HSPB11 coding upstream 128562 7456463 ~ 7457379 (-)
CI01000006_07463938_07471236 PDE6B coding upstream 135289 7463190 ~ 7472462 (-)
G45002 NA non-coding downstream 113766 7197822 ~ 7198027 (-)
G45001 NA non-coding downstream 114164 7197412 ~ 7197629 (-)
G45000 NA non-coding downstream 114576 7197016 ~ 7197217 (-)
G44997 NA non-coding downstream 120272 7191309 ~ 7191521 (-)
G44976 NA non-coding downstream 137983 7173508 ~ 7173810 (-)
G45077 NA non-coding upstream 76883 7404784 ~ 7405053 (-)
G45078 NA non-coding upstream 77248 7405149 ~ 7405447 (-)
G45811 NA non-coding upstream 144681 7472582 ~ 7472976 (-)
G45828 NA non-coding upstream 173684 7501585 ~ 7501933 (-)
CI01000006_07522441_07525197 NA non-coding upstream 196965 7521049 ~ 7525813 (-)
CI01000006_06974359_06976736 NA other downstream 334921 6973224 ~ 6976872 (-)
CI01000006_04560607_04560993 NA other downstream 2749725 4559509 ~ 4562068 (-)
G43549 NA other downstream 2956365 4352510 ~ 4355428 (-)
G43102 NA other downstream 4377809 2908451 ~ 2933984 (-)
CI01000006_02624725_02626124 COX8A other downstream 4685607 2624436 ~ 2626776 (-)
CI01000006_07500281_07507754 NA other upstream 175244 7500246 ~ 7507976 (-)
CI01000006_10453630_10483241 NA other upstream 3154955 10453613 ~ 10484006 (-)
G47658 NA other upstream 3703010 11030911 ~ 11033127 (-)
CI01000006_11651067_11653761 SMD3, SNRPD3, SNRPD3L, MGC52856 other upstream 4322462 11650363 ~ 11654424 (-)
CI01000006_12348300_12348961 GLRX other upstream 5006508 12347180 ~ 12349383 (-)
G45055 NA non-coding downstream 549 7325453 ~ 7325678 (-)
G45054 NA non-coding downstream 1012 7324841 ~ 7325215 (-)
G45053 NA non-coding downstream 3477 7322487 ~ 7322750 (-)
G45052 NA non-coding downstream 4124 7321600 ~ 7322103 (-)

Expression


Co-expression Network