CI01000006_08222787_08225568 (MED15)


Basic Information

Item Value
gene id CI01000006_08222787_08225568
gene name MED15
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 8222787 ~ 8225568 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000006_08222787_08225568.mRNA
ATGATGCCCCGTCCTGGGATGCAAATTCCACCTCGGTTGCCCCGCGCCACCCCGAACTCTGCCATTCCTCAAAACCCCGCTGCCATTGGAGGACAGCAAATGCCACAGGGTCAGCAAATGATGTCATCACCCTCCCCAGTTCAGGTGCAGACGCCCCAGTCGATGCCACCTCCCCCGCAGCCTCAGCCATCCCCCCAGCCTCCTTCCTCTCAGCCCAACTCTGTCAGCTCTGGTCCGACCCCATCTCCAGGAGGTTTCCAACCCAGTCCCTCTCCCCAGCCATCCCAGAGTCCTGCCTCTTCACGTACCCCCCAGAGTTACCCCCTCCAGGTACCTTCACCTGGACCCCTAAATACACCAGGCAATCCAAACTCTGTGATGAGTCCAGCAGGGGCTTCACAGTCTGAGGACCAGCTTTACATGGATAAACTGAAGCAGCTGTCAAAGTATATTGAGCCGCTGCGCAGGATGATTAACAAAATAGACAAAAATGAAGGTACTACAGACTTTCTTTTGGTGTGGATTTATTTTTTTCCCCTTGATTTTAGTGCTCATGCTTTATGTTTGGTCTTTACAGACAGGAAGAAGGATTTGAGCAAAATGAAAAGTTTGCTTAACATTTTGACTGACCCCAACACAAGGTGTCCTCTTAAAACACTACAGAAGTGTGAAATAGCATTGGAGAAACTAAAGAATGACATGGCAGTGCCGACTCCTCCCCCTCCCCCAGTGCCCTGTACCAAAAAGCAGTACCTGTGCCAGCCACTGCTGGATGCTGTCTTGGCCAACATCCGCTCCCCGGTTTTCAACCATTCACTTTACCGCACGTTTGCTCCTGCTATGACAGCAATTCATGGACCCCCAATCACGGGCCCCTCAATTCCTTCCCGTAAGCGGAAGCTTGAGGATGACGAGCGCCAGACCATCCCTAACATACTTCAAGGGGAGGTGGCTCGGCTTAATTCCAAATTCCTGGTCAATCTGGACCCGTCCTTTTGCAGCAACAATGGAACGGTGCATCTCATATGTAAACTAGGTCAGTTCAGAACTTGTGCCCAATATATGCATCCTGTACATGTGTACAAATTAACCATTCACTCCTGGTACTGTCTCTGTCTAGATGATAAAAATCTTCCCAGTGTTCCCCCTCTTCAATTGAGCATTCCAGCTGACTACCCCGATCAGAGCCCCCACTGGGAAGATGACGGTCAGCAGTATGAGGCCAACCCCTTCTTGCAGAATGTGCATAAGAACATGACCTCTAAACTCCTTCAGCTTCCTGACAAGCACTCTGTGACGGCGCTGCTGAACACCTGGGCTCAAAGCGTGAGACAGGCTTGCCTTTCAGCT

Function

symbol description
med15 Predicted to enable transcription coregulator activity. Predicted to act upstream of or within regulation of transcription by RNA polymerase II. Predicted to be located in cytoplasm and nucleus. Predicted to be part of mediator complex. Human ortholog(s) of this gene implicated in schizophrenia. Orthologous to human MED15 (mediator complex subunit 15).

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K15157 MED15; mediator of RNA polymerase II transcription subunit 15

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000006_08222787_08225568.mRNA True 1350 mRNA 0.51 8 8222787 8225568

Neighbor

gene id symbol gene type direction distance location
CI01000006_08198328_08199463 NA coding upstream 23121 8197881 ~ 8200145 (+)
CI01000006_08184916_08188512 NEFMA coding upstream 33488 8184799 ~ 8189299 (+)
CI01000006_08108713_08122179 NA coding upstream 100423 8108563 ~ 8122364 (+)
CI01000006_08025159_08032131 NA coding upstream 190164 8025159 ~ 8032623 (+)
CI01000006_07939608_07940846 RXFP3 coding upstream 281372 7939318 ~ 7941415 (+)
CI01000006_08305571_08341681 NA coding downstream 80003 8305571 ~ 8341681 (+)
CI01000006_08366730_08400944 NA coding downstream 140522 8366090 ~ 8402325 (+)
CI01000006_08528828_08531392 NA coding downstream 303260 8528828 ~ 8531457 (+)
CI01000006_08673737_08674685 NA coding downstream 448012 8673580 ~ 8675114 (+)
CI01000006_08757702_08765273 WDR5, WDR5B, WDR5.L, BRAFLDRAFT_281422 coding downstream 531851 8757419 ~ 8766062 (+)
G45392 NA non-coding upstream 63320 8159245 ~ 8159467 (+)
G45391 NA non-coding upstream 63894 8158636 ~ 8158893 (+)
G45356 NA non-coding upstream 65252 8154796 ~ 8157535 (+)
G45381 NA non-coding upstream 76707 8133207 ~ 8146080 (+)
G45346 NA non-coding upstream 153543 8069032 ~ 8069244 (+)
G45359 NA non-coding downstream 9170 8234738 ~ 8238406 (+)
G45438 NA non-coding downstream 107011 8332579 ~ 8333478 (+)
G45528 NA non-coding downstream 347126 8572694 ~ 8574744 (+)
G45543 NA non-coding downstream 457413 8682981 ~ 8739598 (+)
G45630 NA non-coding downstream 479765 8705333 ~ 8705667 (+)
G45355 NA other upstream 10399 8209555 ~ 8212388 (+)
G45336 NA other upstream 200836 8019342 ~ 8021951 (+)
G45265 NA other upstream 302432 7883867 ~ 7920355 (+)
G45178 NA other upstream 539116 7607604 ~ 7683671 (+)
G45416 NA other downstream 593246 8818814 ~ 8834697 (+)
G46652 NA other downstream 1931011 10156579 ~ 10159251 (+)
G47145 NA other downstream 2259790 10485358 ~ 10511806 (+)
G47159 NA other downstream 3190661 11416229 ~ 11521703 (+)
G47318 NA other downstream 3398699 11624267 ~ 11638252 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location