CI01000006_09910027_09913958


Basic Information

Item Value
gene id CI01000006_09910027_09913958
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 9909370 ~ 9914104 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000006_09910027_09913958.mRNA
CTATAAATATAAAGGTGACAAACTACCACTAAAACAGCAAGCAAGAGAACAGACAAGACTACACATCCAAAGGTAAACTGAACAACTGTTGAAAATGGTTTTTCATCTTGGAATTTAAAACTTTACAGTAATCATAAAAATGCAAATAAATAAATATTAAATAATAATAACACATACCTGCAAACTAGTCACTTTTCGGTTACGTTTCATTTTGAATCAAAATATGTAATTTATGTGAATTGTGTGTAGATCTGAAGATTTTTAATGGGTTACTTTCTCATAGACTGGTTAGAACTTTAAGTACCATTTACTAGTTACAACACAAAATAAACATGAATGAACATCCGAAGGTATGTTCATTCAGTAGGCCTACAACTTACCAAAATCCGTATCGTCACATGTAATCGATCATGTAATCAGTGTTTCAACTGCAGAAAGGCGTCAACAGGTTATCAAAATCAGGCGAAATCAAATCGCAAGCTTCTGAATCGAAATCTGGGGGAGGATGCCTCCAGACCCCCTACAACAATTTACCTCTTAAACATGTCACCTTTTTTTTTTTTTTTTTTTTTTTACCTCTTTTGAGTTTGCAGATCTGATAACAATAAATGTAATACATTTTAAAGTGCATAATGTTTTTTTTTTCATTCAGTAGATATGTTTCTGCTTCTGTTATCGGGATTTATCAGCTTCGGCTTGAGTGTCCCTCGTCATTATGTCTTTGTGAATGAATCCAAGACTTGGGCAGAAGCTCAGAGATACTGTAGAGATAAATACTCTGATCTGGCCACTATTGAAAATGAACAACAGACAGTTCAGTTATTGGACACAGTTAAAGATGATTCCATTGATTTGGCCTGGATTGGACTCTATGATGATCTGAACAGTTGGAAATGGACTCTAGAGGACAGTGATTTCTTCAATGATTTTTATCAGGAAGGAGAGAGAGATTACAGGAACTTCAATAATCAACCGGACAACAGTGGTGGGAATGAACTGTGTGTTTACATGGATTATGATGGCAAATGGTATGATATGTCATGTGACAACACGCTGCCATTCATTTGCTATGATGGTAAAGAAAATGTCACACAGAGTTACATCAGAATCTATGACTGGAAAACCTGGTCAGAGGCTCGTAGATACTGCAGAGAGAATTACACAGATCTCGCCAATGTGAGAAATCAGACTGAGAACCAGAGGATCCTTGATAGAACAGGTGGAGGAGGCTGGATCGGACTGTACAGAAACAGGGTTTGGTCTGACCAACAAATTGCCAGTTATGAAAACTGGAAACCAGGCATTCCTTATTCACCACAGCAACCAGATAATGATTATGGGGAGTGGGATTCACCTCACTGTACTGCTGTTTCACTCAAAGATGCAGGCCGATGGACCGATGAGAACTGCTTTTTCAGCATCCCTTTCTTCTGCTACAACAAGAATAATCTGATTTTTCTCTGGTATTTTCTAAAATGGAAAGGAACCTGCACACAATCTTCATGCACCTGTCAGTATCACTTTGTATCTGAGAATAAGACCTGGTTTGAAGCTCAGAGATACTGCAGACAGAATTACACTGATCTGGCCACCATTGATAACATGGAGGAAATGAACAGACTGATCAACACAGTTAATGGGAGTTACAATGGTTCAGCCTGGATTGGACTGTATGGTGATGTCAACAGCTGGAGATGGTCTCTGGATAATGCAGTGTTAGGAGTTCATAAAAGGTGGCTTGGCCAACATCCAAGGAACACAGGTGGACAGAGTCTGTGTGTGAATATGAACACACACAATGGTTTATGGAGTGAAGCTCCATGCTCCAACTTGTCTCCTTTTGTTTGCTACGATGGAAGAGAAAATGTCAGTACAAATTATGTGTATGTTAACCAATTAAAAACCTGGACTGAAGCTCAGAGTTACTGCAGAGAGCATCACACAGACCTCATCAGTATCAGGAATGAGAATGAAAACCATGAGTTCCAGTATTTGTTCAAGAGTGACTTTTATTACTATTTTTGGATTGGACTGACCAGAACCAGATCTTGGTCAGATCAGAGCAACTCTTCATTCAGTAACTGGAGGACAGGACAGCCAGATAATGCTGGAAACAGAGAATACTGCACTGCAGTGTCATTTAGTGACTCTGGGAGCTGGACAGATGAAAACTGCGATACTGCATTTCCATTCATTTGCTACAGTGTGTCATCTTTGACATCATCCCGTCAGTATCACTTTGTGAATGAGAATAAGACCTGGACTGAAGCTCAGAGATACTGCAGACAGAATTACACTGATCTGGCCACCATTGATAACATGGAGGAAATGAACAGTCTGATCAACACAGTTAATGGGAGTTACAGCGGCTCAGCCTGGATTGGACTGTATGATGATGTGAACAGCTGGAGATGGTCATTGGAAGACAATGATTTCTATCAAGAAGGAGAGAGAGATTTCAGGAACTGGTATTATCCACCGAGTAACTTTGTTGGAAAAGAAATTTGTGTTTTCATGTATTGGGATGTCTGGTTTAAAGTGCCATGTGACAGTCCTGTGGCATTTGTTTGCTATGATGGTAGAGAAAACGCCTCTCAGAAGTTTATCTGGGAAGGTACTGGAAGGACCTGGACTGAAGCTCAGAGATACTGCAGAGAGAAATACACAGACCTGGCCAGTATGAGAGATGAGACAGAAAGTAGAGAGGTACTGAGTGTCTCACTTGGAAATGTTGTATGGATTGGTCTGCACAGAAACAGACTGTGGTCAGATCAGAGCAACTCTTCCTTCACATATTGGAGACAAAAGGTCAGTTTTGAAGCTGCACAGCCAGATAATGGTTTTTACACACCAGGACAGAATGGTACTCAACACTGCACAGCTGTGTCTTTACAACATTCTGGCCAGTGGACAGATGAGCAATGCTTGGACAGTTTGCCTTTCTTCTGCTATAGTGGTTATACGATGGGGTTGAGAGTGGAATTCACAAGTGTGGAAAGTTTGTCAAAGTCTCAGATTGAAGACTTTGTGATTATACAAGTAAGTACCTGGATGTTAATATAAAACACTCAATTACAGTTTTTTTTTTTTTTTTTTTTTTTACAAATCTCACAATCTCACAAATACAAAACAAATCACATTTCAGCTCCAAAAAGAATTTATAAGACGGGGACTTCCCAGCAACTTCACCATGCATTTGAGGAAGGAAA

Function

NR:

description
Retinoic acid receptor beta, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000006_09910027_09913958.mRNA True 3209 mRNA 0.39 8 9909370 9914104

Neighbor

gene id symbol gene type direction distance location
CI01000006_09891107_09897750 NA coding upstream 11607 9891107 ~ 9897763 (+)
CI01000006_09884959_09889794 NA coding upstream 19081 9884439 ~ 9890289 (+)
CI01000006_09836923_09844045 NA coding upstream 65022 9836923 ~ 9846207 (+)
CI01000006_09712289_09783579 UNC5DA coding upstream 125791 9712289 ~ 9783579 (+)
CI01000006_09569228_09574340 NA coding upstream 334309 9568280 ~ 9575061 (+)
CI01000006_09918611_09921465 MZT2B coding downstream 4507 9918611 ~ 9921793 (+)
CI01000006_09998680_10008491 LHX5 coding downstream 84576 9998680 ~ 10009048 (+)
CI01000006_10177090_10192651 NA coding downstream 262986 10177090 ~ 10193519 (+)
CI01000006_10363884_10364804 NA coding downstream 449692 10363796 ~ 10365571 (+)
CI01000006_10518326_10566504 SFSWAP coding downstream 604222 10518326 ~ 10566504 (+)
G46569 NA non-coding upstream 52275 9856747 ~ 9857095 (+)
G46566 NA non-coding upstream 57536 9851629 ~ 9851834 (+)
G46565 NA non-coding upstream 57912 9851135 ~ 9851458 (+)
G46662 NA non-coding downstream 72810 9986914 ~ 9987133 (+)
G46665 NA non-coding downstream 74877 9988981 ~ 9989253 (+)
G46671 NA non-coding downstream 79639 9993743 ~ 9994022 (+)
G46677 NA non-coding downstream 98786 10012890 ~ 10013116 (+)
G46680 NA non-coding downstream 102246 10016350 ~ 10017401 (+)
G45416 NA other upstream 1074673 8818814 ~ 8834697 (+)
G45355 NA other upstream 1696982 8209555 ~ 8212388 (+)
CI01000006_08198328_08199463 NA other upstream 1709225 8197881 ~ 8200145 (+)
G45336 NA other upstream 1887419 8019342 ~ 8021951 (+)
G45265 NA other upstream 1989015 7883867 ~ 7920355 (+)
G46652 NA other downstream 242475 10156579 ~ 10159251 (+)
G47145 NA other downstream 571254 10485358 ~ 10511806 (+)
G47159 NA other downstream 1502125 11416229 ~ 11521703 (+)
G47318 NA other downstream 1710163 11624267 ~ 11638252 (+)
G48094 NA other downstream 2363516 12277620 ~ 12279541 (+)

Expression


Co-expression Network