CI01000006_10016544_10031947 (FAM169AB)


Basic Information

Item Value
gene id CI01000006_10016544_10031947
gene name FAM169AB
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 10016375 ~ 10031947 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000006_10016544_10031947.mRNA
GAATGGAGTTCCCTGTAGATGTGTTGGTGTCTGGGAGACATGAGGACTTGGAAAGTTCAGCGCAGAGCTACATGAACAAACTGCTTTACAGCAACCCAGATAACACACAATACCTTACCCTGCCCAGCACCAGGAAGATCCGGATCAGTCCTGCCAATGTCGGGTTTGTTCCTCTTTATGGAACCAACCTCAAACACAAAATCCTGGCTCTGTTTGCTCCTGAGGACCAGTTCACAGCTGTGGCATTGTTCTTGGCTGATCAGTGGTACACAGTTGAAGATATTCTCAGAACATCAAATCCTGCAAGAGAAGGCCTTGTGAAGGTAAGGTCTGTGGGCGAGAGGATAGTCTTATATGTGCTGAACCGCATCATTTACCGGACGGTGGAAATGGGTTCTAACGAGGTGCCGTTCCTGTGCCATGAAGAAGACGTCTTTGCCAAAATCCTCTGGAAGAATGGAGAGGCGGTGGGCTTCTACTCGGTCAAATCTAAAGGTAGATTGTGTAATAGCTTTGTGAGCCAGTGCTACCTACTTCCTGTCATGGACTCTATATTTGTGCGGAAGAATCACCGTGGTAACGGTCATGGCTTGCAGATGTTGGAGGACTTTGTGGACTCTTTTAAAGATGATGAACTAGGCTTGAAATACCCTTTAACATTGGCAATGCAAAAGGTATGCAGTCAGTACCTGAGAACGTACCCAGCCGATGTGGACCTGCTGTGGGAGGTGGAAGGAGTTGGAGGTCCCTACCAGAAAGTGAAAGTGGCAAGCAAACTTGGCTCCACGACACTACAATGTAACAATAGCTCATGGGCAGCAGAAGAAGGCAAAAATGGAGATGTTGCAGTTAATGAGGTGGAGATGACCGAGGAGAGCTGCCTGGACATCACAGAAGATGTGTTGGTTGTCAACAAACATCTTAAAGTAACAGAAGAAATAAATGACTTGCCCATTTCCACACGTACACGGAGCAGCGAACGCAGACAAAAGAAAAGGCAGAGGGAAGAACCAGAAGAGAGTGCTGTGGAAAACCAACCTGAAAAAATTAACAGATTGGCCGAACCAGAAGCAGAGACAGAACCTGATGTATCTGAGACTAAAAAACACAGGGATGGGGAAAATGGAGGAGAACAAGAAGAAGAAACCTCGGTCCAGGTGGAGGAGGCTGTGACCACAGAGGTCCCTGCAACAGACACAGAAATTTTGGTGGCTGAAGTCAATGGAGAAATGAGTGACAGTCAGGAAGAGGAGAACGAGAGGTCGGCAGACACATCAGAGGATGCACAGGCTGAACAAGAGCGCCCACTAGAGGCAGAAGCTGTCATCCAAAATGGCACTGCTGAGGAGATGGAGGTAGAGAGAGAAGCACAGGATGACATCATCGTCACCCCTGAGGAGTCTGAGGAACCATCTGAAGTGGTGGAGCAGATCGGCCAAGAACTTATTACTGAGGAGAAAAAGGAAGCAGAGGCAGAAGTTGCTCCTCCTGTTGAGGAGGAAGGGGAAGTTGAGAAGAAACAGGATGAAGAAGTAGCTCCTGCAGTTGAAGAGGAAGCAGCTTCTGCAGTTGAGGAAATTGAGGACACTCATCCATCAGCTGTTCCTGAGGCTCCAGTCCCTCCGACTGACCTGATTGAGTGCGTTTCCTCTGTGCAGGACAGCGAGGCTTCAGAGGAACCAGCCGTTCCTGAGCAAGAAGCTCCAGAGGAGGAGATGGCCACTTCTCCTAGTGCTACAGGTGACGAAGAAGTAATTATAGAGACCGAGGGGCCAACTATGAACCAGGAAGATGAGACGGCCTCCGATGAGCCACTTGAGACAGAGGAAAGCCAACCCACCACGGAGGACTCTGAAAAAGCGGAGCCAGAGGAAGAAAAACTGCCTGAGACTGATGAAAAAGATGAACAGAAAGAAGAGGAGGACACCGTCACCACTGAAGATGATAATGAGGGGAAAAGCTCAGATGACGAAACCCACGATTCCCCTCCTGGGGTTCGAGTTCTTAGAGGAGGCAGGAGCAAACCCGTCCCACCAACACCCAAGCGCACATCCAGTAGACTGAGCAAAGCTGTGGTCGTACAGGAGCTCAGACAGTTGCTTGCATTTTTTTGTCAGCTGAAAATATGGAAAAGAACACTAGAAATCACCATTTTATGTGAATCATTCCGTGAATTTATGTGAATTTCCTCTCAGCTTAAAGGGGTCAAAGGTCATGCTTTTTGTTAAGAGGAAATCAAATGATTACAATTATTAGTGCTTTATACTTTATTTACTTGTTTTAGGTGTTTGAGCAATATTTTTCTGAAGTAGTTTTCTCAACCTGTGATTTTCCTTGTAGTAAATAAA
>TU53425
TCTTACGGGTGTGGAACGACATGAGGGTGAGCATTAAATGACTGAATTTTCATTTTTGGGTGAACTAACCCTTTAAGGTTTCATGGAAATCCTTCCGTAATGTCACGTGATAATGACAGGTTTTCACAAAATGTGAATTAACGCGTTGATGTGCATGTCCATACATACACTACACTACAAATACATTATTAAATATATATCAACACCTAAATATGCAAGTATGTTTATACCTGAGGCAAGTGCAGGTTTATATAAAGTTTACATGTAGGCTAATGTTTACTGTGTTAGCACCCAAAACCTTTGTGTTAAAATTTACGTGTTTTTTTTTTAAATACCAACACTAGATTTTGCATTACGCTGAGAACTAATGCATACAATAAGTGGTGAATCTTTATAATTGGCTTTAAATAATGTAATATTGTCAAAATTTGTGTCGACGTCGTTAGAATTTTACTCGTACTGAAGTAATTTACTTTTTTTTTCATTCTGCGCACCCTTCAATTTTTTTCTAAAAATATAACCCCACGTGTTATTAAATCCCTCATATATATATTATCTCATTCATACATTGTTTAAGCTGTGAAAGAAGCGAACACCGTTTCAATTTTTGAGTTTAACACTCCATGGTTAATATGGGTGACCACACGAGGGCGCAGTTGGATGATAAACAAAAGCCATTGCGGGAGGCTGTAAACATTCTTTCAAGACTTGTTTGTCTTCACCGTTATGTCACTGTAATAGGACAGTTGCTTGCATTTTTTTGTCAGCTGAAAATATGGAAAAGAACACTAGAAATCACCATTTTATGTGAATCATTCCGTGAATTTATGTGAATTTCCTCTCAGCTTAAAGGGGTCAAAGGTCATGCTTTTTGTTAAGAGGAAATCAAATGATTACAATTATTAGTGCTTTATACTTTATTTACTTGTTTTAGGTGTTTGAGCAATATTTTTCTGAAGTAGTTTTCTCAACCTGTGATTTTCCTTGTAGTAAATAAATACC

Function

symbol description
fam169ab Acts upstream of or within camera-type eye development. Is expressed in female organism. Orthologous to human FAM169A (family with sequence similarity 169 member A).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000006_10016544_10031947.mRNA False 2348 mRNA 0.47 13 10016379 10031947
TU53425 True 1002 lncRNA 0.39 1 10016375 10017376

Neighbor

gene id symbol gene type direction distance location
CI01000006_09870216_09870854 NA coding downstream 145525 9869797 ~ 9870854 (-)
CI01000006_09857830_09868080 NA coding downstream 148142 9857816 ~ 9868237 (-)
CI01000006_09383325_09387907 AQP3B, AQP3 coding downstream 628472 9383270 ~ 9387907 (-)
CI01000006_09338560_09342684 VPS29 coding downstream 672596 9338265 ~ 9343783 (-)
CI01000006_09330816_09334587 ATPBB, GPN3 coding downstream 681614 9330616 ~ 9334765 (-)
CI01000006_10044550_10045827 NA coding upstream 12103 10044050 ~ 10047230 (-)
CI01000006_10053771_10055045 NA coding upstream 21576 10053523 ~ 10055823 (-)
CI01000006_10078319_10079570 NA coding upstream 45816 10077763 ~ 10079570 (-)
CI01000006_10086956_10090090 NA coding upstream 54608 10086555 ~ 10090090 (-)
CI01000006_10096004_10116009 PTPRA coding upstream 63937 10095884 ~ 10116009 (-)
G46979 NA non-coding downstream 20637 9995539 ~ 9995742 (-)
G46973 NA non-coding downstream 26943 9989204 ~ 9989436 (-)
G46972 NA non-coding downstream 27768 9988401 ~ 9988611 (-)
G46902 NA non-coding downstream 95206 9918579 ~ 9921173 (-)
G46891 NA non-coding downstream 162147 9854032 ~ 9854232 (-)
G47024 NA non-coding upstream 162485 10194432 ~ 10194641 (-)
G47035 NA non-coding upstream 200232 10232179 ~ 10232399 (-)
G47053 NA non-coding upstream 232134 10264081 ~ 10264320 (-)
G47410 NA non-coding upstream 276933 10308880 ~ 10309101 (-)
CI01000006_10349084_10362629 NA non-coding upstream 327353 10348973 ~ 10363587 (-)
CI01000006_07500281_07507754 NA other downstream 2505423 7500246 ~ 7507976 (-)
CI01000006_06974359_06976736 NA other downstream 3039507 6973224 ~ 6976872 (-)
CI01000006_04560607_04560993 NA other downstream 5454311 4559509 ~ 4562068 (-)
G43549 NA other downstream 5660951 4352510 ~ 4355428 (-)
G43102 NA other downstream 7082395 2908451 ~ 2933984 (-)
CI01000006_10453630_10483241 NA other upstream 450909 10453613 ~ 10484006 (-)
G47658 NA other upstream 998964 11030911 ~ 11033127 (-)
CI01000006_11651067_11653761 SMD3, SNRPD3, SNRPD3L, MGC52856 other upstream 1618416 11650363 ~ 11654424 (-)
CI01000006_12348300_12348961 GLRX other upstream 2302462 12347180 ~ 12349383 (-)
CI01000006_12569291_12581457 CELL, CEL.2, CEL.1 other upstream 2318812 12569205 ~ 12582487 (-)
G46986 NA non-coding upstream 207 10017583 ~ 10017849 (-)

Expression


Co-expression Network