CI01000006_10372387_10387314


Basic Information

Item Value
gene id CI01000006_10372387_10387314
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 10372129 ~ 10387602 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000006_10372387_10387314.mRNA
AGTAACATGACTTGCAATGTGACATGAAAAATAAATATTTATGTATTTGTACTATTTTGAGGTCACTAATCAAATAAGTAAAATTGTGGCACTGATCCTCTGAGCTACTTTTTGCAAATGGTCAGATGTTCCTGATTCCATTTCTGGACAAGATGCTCTTTGGATCATTAAATCATGCTGGATTATCATCAGGTTTAACATTTCTGGAGTTCATACAGCTCAAGTGCTGCTGTCATTAAAGCAAAAGAAAAGCAGACCGAAGTCATTAAGCCATTGTGAAAATAAAATATGTTTTTTCTTTTGTTCACGGAACTAGCAACATCCCGCCAATATCACTTTGTGTCTGAGTCAAAGACCTGGACTGAAGCTCAGAGATACTGCAGACAGAATTACACTGATCTGGCCACCATTGATAACATGGAGGAAATGAACAGTCTGATCAACACAGTTAATGGGAGTTACAGCGGCTCAGCCTGGATTGGACTGTATGATGATGTGAACAGCTGGAGATGGTCATTGGAGGACAATGATTTCTATCAGGAAGAAGAAAGAGATTTCAGGAACTGGTATCATGAACCGAACAACAGTGGGGGGAAGCAACTGTGTGTTTACATGGATTATTATGGCAAATGGCATGATTTGTCATGTGACAGCACGCTGCCATTTGTTTGCTATGATGGTAGAGAGAATGCTACACAGAAATATGTCAGAATCATTGATGGGAAAACCTGGTCAGAGGCTCGTAGATACTGCAGAGATCATTACACAGATCTCGTCAATGTGAGAAATCAGACTGAGAACCAGATGATCCTTGAGAGAGCAGGTGGACAGGTCTGGATCGGACTGTACAGAAACAGAACTTGGTCTAACCATCAGATTACCAGTTATGAAAACTGGAGACCATATATTCGTGATTCTGGGATGCAACCAGATAATGGTGAAGATTACATTTATACTTCACTTGTGGCAGAAACTGGTTTTCAGCATTGTACTGCTGTTTCATTCGGTCATTCAGGTCAATGGACAGATGAGATCTGCATATCCAACATGCCTTTCTTCTGCTACAACAGAACCTGCATACAATCTTCATGCACCCGGCAATATCACTTTATGAATGAATCCAAGACCTGGACTGAAGCTCAGAGATACTGCAGACAGAATTACACTGATCTGGCCACCATTGATAACATGGAGGAAATGAAGAGGCTCTTTAAAACAGTACGTGGGACTTACTATGGCAAAGCTTGGATTGGACTGTATGATGATCTGAACAGTTGGAAATGGTCTCTGGACAACACAACATTAGTAGGGGGGTTTAAGAGCTGGTATGTCCTGCAACAAAGGAACTGGCTTGGACAGAGTCTGTGTGTGTACTTGTCATATTATCGGGGAACATGGAGTGAAGGCTTTTGCCTGCAAAAACGTCCATTTGTTTGCTATGATGGAACAGTGAATGCTAGTGCAAGTTATGTGTTTATTGACCAGTACAAAACCTGGACTGAAGCTCGAAGTTACTGCAGAGAACATCACACAGACCTCATCAGTATCAGGAATGAGACTGAAAACTTCAAAGTTCGGTCATTACTTTCATATTATTCAGTTGTTTGGATTGGACTGTACAGAACCAGATCTTGGTCAGATCAGAGCAACTCTTCATTCAGTAACTGGAGGACAGGACAGCCAGATAATGCTGGAAACAATGAATACTGCACTGCAGTGTCATTTAGTGACTCTGGGAGCTGGACAGATGAAAACTGTAATACAGCATTTCCTTTCATTTGCTACAGTGCATTAGCATCATCCCGCCAGTATCACTTTGTGAATGAGAATAAGACCTGGACTGAAGCTCAGAGATACTGCAGAGAGAATTACATTGATCTGGCCACCATTGATAACATGGAGGAAATGAACAGTCTGATTAACACAGTTAATGGGAGTTATAATGGTTCAGCCTGGATTGGACTGTATGATGATATGAACAGCTGGAGATGGTCATTGGAAGACAATGATTTCTATCAGGAAGGAGAGAGAGATTTCAGGAACTGGAATCATGAACCAGACAATGCTGGGGGGAAAGAACTGTGTGTTTACATGCAACGTAGTGGAAACTGGTTTGATGTGCCATGTGACAGATACTACGCATTTGTTTGCTATAATGAAAACTCTCAGAAGTTTGTTCTGGTAAGTGAGAGTAAGACTTGGACTGAAGCTCAGAGCTACTGCAGATGGAAACACACAGACCTGGCTAGTGTGAGAGATGAGACAGAGCTTCAGCAGATACTGAGTGTTACAGGTTATGGAAATTTTGGTTATGACGTGTGGATTGGACTGCACAGAAACAGACTTTGGTCAGATCAGAGCAACTCTTCCTTCACATATTGGCAGCCATGGACTCGACAAATTGATCCACAACCAGATAATGGTTTAAGTGTCCCAGGACAGCAGGGAGCTCAACACTGTACAGCTGTGTCTTTAAAATACTTTGGCCTTTGGACAGATGAAAGATGCTTTGACAGTCTGCCTTTCTTCTGTTACAGTGGGCGAGAAAACACCTCTCAGAAGTATATCTGGGTATCTGAGGAAAGAACCTGGACTGGAGCTCAGAGATACTGCAGAGAGAATTACACAGATCTGGCCAGTGTGAGAGATGAAAATGGAGCGTCAACAGATACTGAGTGTCTCACTTTGAAAATACTGTATGGATTGGTCTGTACAGAAAAGGACTGGGGTCAGATCAGAGCAACTCTTCTTTCACATATTGGAAACGATAGGTCCTTGGTGATGGTGCACAGCCAGATAATGGTTTTTACACACCAATGGTTTTTCAACACTGCACAGCTGTGTCTTTAAAACAGTTTGGTCACTGGACAGATGAGCAATGCTTGGACAGTCTGCCTTTCTTCTGCTATAGTGGTGAGCAAATATACAACAACTTCTATTACAATGATTCAAAGATACTGTCACAAGGAGAAACAAGCACTATCACTCATTTAACAGCAGATTCATAAAATAAGGAATTGTAAATTCCTTGTGATGATGCTGCCAGATCATCAACACAATCAACAATTTGCATTAGAATAAGTTTAAACCATAAAGGAGGACAATAAA

Function

NR:

description
Retinoic acid receptor beta, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000006_10372387_10387314.mRNA True 3108 mRNA 0.41 7 10372129 10387602

Neighbor

gene id symbol gene type direction distance location
CI01000006_10349084_10362629 NA coding downstream 8542 10348973 ~ 10363587 (-)
CI01000006_10211545_10223229 SMARCB1A, SMARCB1B, SMARCB1, SMARCB1.S coding downstream 148293 10211431 ~ 10223836 (-)
CI01000006_10157899_10159258 CHCHD10 coding downstream 212871 10157847 ~ 10159258 (-)
CI01000006_10156167_10157125 DDT coding downstream 215004 10155884 ~ 10157125 (-)
CI01000006_10152518_10154866 NA coding downstream 217263 10151961 ~ 10154866 (-)
CI01000006_10402704_10447782 NA coding upstream 15093 10402695 ~ 10449101 (-)
CI01000006_10453630_10483241 NA coding upstream 66011 10453613 ~ 10484006 (-)
CI01000006_10499329_10508831 NA coding upstream 111693 10499240 ~ 10509655 (-)
CI01000006_10676705_10699710 NA coding upstream 288765 10676367 ~ 10699882 (-)
CI01000006_11320839_11338355 STXBP1, STXBP1A coding upstream 932860 11320462 ~ 11338355 (-)
G47410 NA non-coding downstream 63028 10308880 ~ 10309101 (-)
G47053 NA non-coding downstream 107809 10264081 ~ 10264320 (-)
G47035 NA non-coding downstream 139730 10232179 ~ 10232399 (-)
G47024 NA non-coding downstream 177488 10194432 ~ 10194641 (-)
G47444 NA non-coding upstream 130581 10518183 ~ 10520351 (-)
G47520 NA non-coding upstream 273413 10661015 ~ 10707544 (-)
G47544 NA non-coding upstream 343843 10731445 ~ 10732231 (-)
G47558 NA non-coding upstream 365556 10753158 ~ 10757542 (-)
CI01000006_07500281_07507754 NA other downstream 2861173 7500246 ~ 7507976 (-)
CI01000006_06974359_06976736 NA other downstream 3395257 6973224 ~ 6976872 (-)
CI01000006_04560607_04560993 NA other downstream 5810061 4559509 ~ 4562068 (-)
G43549 NA other downstream 6016701 4352510 ~ 4355428 (-)
G43102 NA other downstream 7438145 2908451 ~ 2933984 (-)
G47658 NA other upstream 643309 11030911 ~ 11033127 (-)
CI01000006_11651067_11653761 SMD3, SNRPD3, SNRPD3L, MGC52856 other upstream 1262761 11650363 ~ 11654424 (-)
CI01000006_12348300_12348961 GLRX other upstream 1946807 12347180 ~ 12349383 (-)
CI01000006_12569291_12581457 CELL, CEL.2, CEL.1 other upstream 1963157 12569205 ~ 12582487 (-)

Expression


Co-expression Network