XLOC_000072


Basic Information

Item Value
gene id XLOC_000072
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 6379878 ~ 6554470 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00003022
GTTCGAAGTACCTTCAACTTCAGTCTCAGCACTTTCAACTAAATATCTAAAGAAAAAGTAGTCTAAATGTCAGGAAGGAGAAGAAAACCATCAAATTTATGAACAATTTTAGCCAGTTTCAGCTGTCTGAGAGGAAAAAAAGagacatcattcttcaaaacgtctTTTGTCTTGCACTGAAGAAAGAAGGTTTGGAGCGacacgaggAGTGGAACCTGCCAGAAGGTGCCCTGAACTGCGGAGACCTTTAAACCCAGTCCATGGAGACGGGTGGATTAAGGCAGCTGCGAGTCATGATTGACAGCTGTCCGTCAGCAGGGGCTCATTTAAATATATCGCAGTTCAGAatgcatgcttatgtgtgtgcgtttgtttttTATCATAAATAGAAGTTGATGCAAAAACTTGGCAGGATGTGGTGATGGTcgcaagttatttattatttttaaaaaaagagattagcatttttttgtcatttgtgtTGTTATTTACTCTCCCGCTATGGCACTCTAAGTATGCAAATGACTTCCTTTGGAATACAAATGGGGATGTTTTCTTTTGAAAATGCTGGGTAAATGTTTT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00003022 True 582 lncRNA 0.39 4 6379878 6554470

Neighbor

gene id symbol gene type direction distance location
XLOC_000071 hecw2b coding upstream 13812 6357059 ~ 6366066 (+)
XLOC_000070 LO018629.1 coding upstream 50586 6307305 ~ 6329292 (+)
XLOC_000069 fastkd2 coding upstream 107732 6225493 ~ 6272146 (+)
XLOC_000068 retreg2 coding upstream 169160 6189949 ~ 6210718 (+)
XLOC_000067 cnppd1 coding upstream 194346 6161930 ~ 6185532 (+)
XLOC_000074 si:ch211-93g23.2 coding downstream 85967 6640437 ~ 6646356 (+)
XLOC_000075 ube2f coding downstream 92059 6646529 ~ 6664123 (+)
XLOC_000076 NA coding downstream 110563 6665033 ~ 6668339 (+)
XLOC_000077 NA coding downstream 204713 6759183 ~ 6760930 (+)
XLOC_000078 CU302223.1 coding downstream 233220 6787690 ~ 6787804 (+)
XLOC_000065 NA non-coding upstream 580786 5795013 ~ 5799092 (+)
XLOC_000064 NA non-coding upstream 651194 5706970 ~ 5728684 (+)
XLOC_000059 NA non-coding upstream 1066283 5311479 ~ 5313595 (+)
XLOC_000057 NA non-coding upstream 1349723 4901460 ~ 5030155 (+)
XLOC_000056 FO744838.1 non-coding upstream 1699401 4598060 ~ 4680477 (+)
XLOC_000080 NA non-coding downstream 402443 6956913 ~ 6990027 (+)
XLOC_000081 CU929161.1 non-coding downstream 509367 7063837 ~ 7063943 (+)

Expression


Co-expression Network