CI01000006_11784520_11803562


Basic Information

Item Value
gene id CI01000006_11784520_11803562
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 11782031 ~ 11803850 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000006_11784520_11803562.mRNA
CTTTAAAAACAATTATGGGAACCTCATTTCAGTCACTTTACTAAAATATCATTCATTTATTGATTCTTGTATCTGATTTTAAAATTGTGATTTGGTTGTCAGATGAATGGACAACAAACTCCAAACCCTAAACGTCAGAATGTAAATGCATTGTTAAGGCTACCTCAGTTGGAAAAAAACCCTGCTTAATCCAGCTAAGACCAGGTTTTTTTTGTTGTTGTTTCTTTGTTTTTTAGCTGGTCTCCAAACCTGGGTCTTGTCTAGCTTGTCTCTCAGCATGGTAAAAACTGACATGTATCTCATTTAGCTGCAGAGCCCGCTAGCCTTCTAGTCTGGACAGGTTGAAAACTGCCCAAAACAATTCTAAAACCAGCCATTTGACCAACATGGGAGACCAACTAAGACCATCAACACATCTCAGACTGTTTTAAGAAAGTTCTTCAGCAAGAATGGACATTAACAATACCTTAAACCATGTTGCTAGTTGAGAAGAGATGTGCTATTGCTAATTAGCAATAAAATTGTCTCATGGATCAAATTTGTGATAAACTCTCTTAGATTTGAATTAAAACAGAATTTGAGTGATACCTAATTTCATAGAGCCAATTTACCAGACTGGAAGACCAACTAAGACCATCAACTCATCTCAGACTGGTTTAAAAAAGTGTTTGTAAGTAAGAATGAACATAAATAATACCTTAAACCATGTGGCTAGTTGAAGAGAGGTATGCTATTGCCAATTAGCAATTAGATTTGTCTCATTATAGATAAAATTGGTAACAACATACCTTAGATTTGAATTAAAAAGGCACTTGAGTGATATCTAGAGACTAGAATATAATAGAGCCAATTGACCAGCCATGGGAGACCAACTAAGACCATCAAATCATCTGGTTGATGAAAAACTAGTTTAAGAACGTTTTTCAGCTAGAGCAGACATAAATGATCCTTTAAACCATGTGGCTTTTTGAGGAGAGGTGTGCTATTGCTAATTAGTGATCAGATTTGTCTCATTGTAGATAAAATTGGTTGCAAAATCCCTTGGATTTGAATTAAAAAGGGACTTGAGAGATATCCACAGTAGACACTTTAGCTGCTTTTCCACCAAAATTGCCTGGAACAATCTGTCCCAGGAACTTTATTCCCAGGAACTTTTTCCCCCCAGACCTGTTGCTGTCTGTGTTTCCATCGCGATCTAAAGTACCGTGAAGATTAAGTCCGGTGACGTAGGACTGCGCGAAACTTTCCAGTTTCAGCTGGATTTCGTCCTCCGCATATAAGCTTAATAAAGCCTGAACCTCACACCATCCATACCGGCGTGATGAATATGATGGATTGAACTGGATTGAACTGGAATAAATACTTTGAATGTTGCGATCCTATCGGGCTTATGATAGCTACCTGAATCGTAACAAAGCACTGTTTGCCAGAGGAGAACTGGCCCCCTGACTAAGCCTGGTTTCTCCCAAGGTTTTTTTCTCCATTTTAACACCTGTTTGCCACCTGTTTGCCACCTGATGACACCTGTTGGAGTTTGGGTTCCTTGCCGCTGTCGCCTTTGGCTTGCTTAGTTGGGGACACTTGACATTTGATATTCAACAGTGCTTTGCATCTGCCTACATTGACCGCATTTTCTTTAAGAGCTGCTGTGCAGCCAAAATTATATACCATTTATCACTGTAAAGCTGCTTTGACACAATCTGCATTGTAAAAAGCGCTATATAAATAAAGGTGACTTGACTTGACTTGACCTCGTCGTCAGTCCATCTGTCGTATTTTTAAACTCCATTGTTAATTCGAATAGCAAACAGCTCTTGCTGCACGCCCCGCAACAGACTTTTAAAAATGGTGGTTGAAATAAAATGCTGCGTGAACTCAACCAATCAAAATGCTGCGTGAACTCAACCAATCAACATGTTCAGCACCCATTTCCCACCCCCGAAAGTTCCTGAACTTTGGAAAAGTACTACCTAGTGAGCAGGTACTTTCTGAGGGGGAAATTTTTACCCAGAACTTAATTTAGACCCTGGTTCCTGCGGTCGAAACACACCGATTACCACTTTAAAGTCCCTAGTTCCTGGGGAAAGTTCCTGCAGTGGAAACGCAGCTTTTGTGATGGGCTTTTTAGACCCTACTGGTTAGCAATGCACTAAAAGCACTACACTTCAACAACTACATAGCAATGCCTTACCATTGTGGCAGTGAGTTTTACAAAAGAAAAACAAACTGCACCTTTTCAAATAGCAAAAGTCTTTTAGTTTAACCCCATCTTGTATTTCTCTGACCTTGGAGATGACAACAGTTCAGTGGTGAGGCTTTTGTTGAAGTAGAAAGCCAGAAACACATCCTCAGTAGCTTTGGCACAGGAACGGATAAATATCTAATCACCTTGTTTTGGCACGAAGAGAGCGCCAGTCTGGCAGGTCCGGTGGCATTCTAACCCCACACCTGGTCCATCCGCACCTATTGATTCGGCTAAATAAGCAGATATGGGATTGATCCGTGTGCACGCTCCCCAACTAGCATGCAAATCAGACAGAATCAGACACCGAGAGATGGAGAGAGAGAAAATTCTGGCAATCGCTCTGTCTGATCATACAGAATCGAGGGGGTCTTCGCCGGAGCACATCCTAGTCCATGAGGAAAAGCCAACACTGTCTTTCCACAGGCTCTCATGTGGGGGAACGCTGGAGGGAGAAGACAAAGGTGGCTGGGCAAAACACAAAGTCTTCACTCTAGTTCTCCAGCAGGTGGAGATGAGAGAAAGCAATAATGTTACTCCCATAACAGAACCTGATTATGACTTGAAGAACTTGGAGTGGTTCTCTCCATACAGAGACTTTAGAATTCCATATCGGAATGGATGCAGACAGTGGATTTCTGGGAAAAACATGAAAAAAGAAAGCCAGTGGGTTTGGAACAATGTGAAGCGGAAACAAGACAGTGATACTCGGTTAAGGACAGAGAATATTCTGACTTTTGACCCAAGATGCATTGGAAAAAAGGTCAAGCCGACAGACGTTGTTTTGTCAAGTGGGCGGCTCCGTTTCTGCCGATCTGTAGAATGGTCCCTAGAGCGGTTGCGAGCGGGCAGGGAGGTCCATTCCTCAGCGCGCCCGCTCCTGACCTTCACGGTCGCCTTATCAGTGAGAAAGATCTTTCCCTCCTTACGTCCTGCCTTCCTTGCCCTCACAGGGGAATCTGACTTTGGGCCAGATACTCTCACTCTCTTTCTCTGTCTTTCTTTTCCTCAAGGGATGCCAGAGGTGAAATGGAAGAGAATCTATGATTCCAGTATGGCCACACTTCAAAGTTTTTCCAGTGACAACTGCATTTAAACCACATTAGGAGGACAAAGTTCAGAGGTCATGCTCTGATACAGCTAGATTTCACAGTGAGCTAATGAAAATTGACAATTTAGGTGAATCACACTCTTTTTGTGGCCTTTCCAAGGTTCTTTTTACTGTGCTAATGGCCTTGTTTTATCGCCATTCATCATTTGAACGGCTGTACAGACCGCAGGATAAAACAATTACAAGACAGGAACTTCCATGCGGTCCAGGGCAAGCTTGTAACAAATCTATTTACGCCACAACAGGAGACTTTGAAAGTTGTGTGAGAGACAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000006_11784520_11803562.mRNA True 3626 mRNA 0.42 6 11782031 11803850

Neighbor

gene id symbol gene type direction distance location
CI01000006_11751944_11752854 NA coding upstream 28813 11750854 ~ 11753218 (+)
CI01000006_11704767_11714559 WDR34 coding upstream 67370 11704767 ~ 11714661 (+)
CI01000006_11546432_11575289 NSMFA coding upstream 206555 11546432 ~ 11575476 (+)
CI01000006_11476139_11503761 PNPLA7 coding upstream 277433 11476139 ~ 11504598 (+)
CI01000006_11469982_11473164 CLIC4, CLIC3 coding upstream 308404 11469129 ~ 11473627 (+)
CI01000006_11888383_11923287 NA coding downstream 84342 11888192 ~ 11924390 (+)
CI01000006_12092807_12095434 NA coding downstream 288539 12092389 ~ 12095668 (+)
CI01000006_12176092_12189504 NA coding downstream 372242 12176092 ~ 12189828 (+)
CI01000006_12219317_12222975 TPGS2 coding downstream 415467 12219317 ~ 12223117 (+)
CI01000006_12230746_12235389 NA coding downstream 425697 12229547 ~ 12235525 (+)
G47333 NA non-coding upstream 61951 11714686 ~ 11720080 (+)
G47368 NA non-coding upstream 97056 11684635 ~ 11684975 (+)
G47362 NA non-coding upstream 113442 11668374 ~ 11668589 (+)
G47315 NA non-coding upstream 255015 11526788 ~ 11527016 (+)
CI01000006_11436920_11440304 NA non-coding upstream 334691 11436920 ~ 11440304 (+)
G47912 NA non-coding downstream 30382 11834232 ~ 11834488 (+)
G47916 NA non-coding downstream 33902 11837752 ~ 11838191 (+)
G47948 NA non-coding downstream 72965 11876815 ~ 11877051 (+)
G48067 NA non-coding downstream 178006 11981856 ~ 11982106 (+)
G48146 NA non-coding downstream 201406 12005256 ~ 12005503 (+)
G47318 NA other upstream 143779 11624267 ~ 11638252 (+)
G47159 NA other upstream 260328 11416229 ~ 11521703 (+)
G47145 NA other upstream 1270225 10485358 ~ 10511806 (+)
G46652 NA other upstream 1622780 10156579 ~ 10159251 (+)
G45416 NA other upstream 2947334 8818814 ~ 8834697 (+)
G48094 NA other downstream 473770 12277620 ~ 12279541 (+)
G48081 NA other downstream 573156 12377006 ~ 12384827 (+)

Expression


Co-expression Network