CI01000006_11888383_11923287


Basic Information

Item Value
gene id CI01000006_11888383_11923287
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 11888192 ~ 11924390 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000006_11888383_11923287.mRNA
CTATAAAATAGACAACATTTATTATTGAAGGATAAATGCAGTACAGAGGATGATTTTGTGGTTAGGACGTGGGAATGCAGATGCATTGAGTTACGCATACAGATTAAATTATAAATTAATAATTTGCAATGTCACTAGCATTTGCATTAGCATCACAGTGGGTTTTTTTGCCATTATCAAAATAGTAAGTGATGACGTTTATGAAGCCGAAGCTCTCCTATGATATACAATCCCGTTCTCGCTTAATCACCTGGAAGAGAAGCGGCACGTGTAAATATGAGAGACGCAGCACTTCAGACGGACCAAAGACCATTCAGCGCTATTCCCAACACAATAACCATGCAAACTACATTATTAAAGAAAAACGTGCCCCAGCCAGTACGGTCACATGGCAGAAGCCCCCCCTGCTTACCCCAGCCCTCTCTAGATGCCCCTTCAACCTGATGGATGTCATCAATAATGGACGCCCGTTGCTCACTCCCACCCCGGGACACAGAAAATCACAAGCCAGCCGAAGTGGCAGCCCGAGCCCAGCAGAGCAAAACCAGTCAGCTGGACACGGCTTCAGAATTCATTTACAGTCTCTATCGCTGACCCAAGGAAATGTAGATCCGAGCTCATCACCTCCCCCGCATCGGACCGCACCACACCACACCAAGCCAGCAGACTGGCACGGCTCAGCACTCCATAAAGTCCAGCCCTGCCATGGAGACACAACTGCAATAATTCGCCCACCCAGAGATGACAGCTTGTTTGTGGGTGTATGGGCGTGCGTGTGTGAGTTTCTCTTTGAAGTGTCACAGCTTTTCAGACTCAGTTGCTGTCTCACTGTGCGCTGTGTGTGTCTCCGCCCCCAGATGTTCTCTCTACCTATTCAGCAGTGTACCTCTCTCGAGCGAGCGGGAAAGTCTAACAAAGAGTTCGCCGATGAGATGGATGAAGTGTCATACTCCCCTAGGCATAAAACAGCATCAATGGGAATGTCACAGGCAGTGTGGGTAACCGAAAGGGCATCGGCAGGTGCTCACGAGACAATTAAGTGCACAGCGCATCGCTTTCCTTTAACCGTTAAAAATTATTGCAATGATCAAGAGGAAGGTGACAGCAACAAATATCCCTGCGTTCGTGTATATGCGACGCTCGCTCCCGCCGTCGAGATCAGAAGAGCTGAAGGTGAACGTGAGTCATTCTCCTACATTATCAGAGCTTGTTTGGCAGCAATGTCAGAGGCAAAGACGCATCCTCCCTTTATCCTGAGGGCCTCTTCATCACAACACGTGGCAGGGGAGGCGGCGGAGAGGGAGTGGGAAAATGACGAACGGCCTATTGTGTAATTAATGAGGACTGTGTTGATTTCCGCAGATAATTTAGCACGCTTGTGAGCGTTTGACTTCTGATCTCCATTTACCCTCCTTTATGGGCTTGGAATTGCTGGTGTAGAGTGTTAACCTTGGGTGAGTATTGCAAGCACTTGCTCGACACACACACTGCATGTTATCGCTCTGATGTGTTTGAGGGCCGGCCAAAAATCAGAATTTAAAGGGTTAGTTCAAGCAAAATGAAAATTTTGTCATTAATTACTTATCCTCATGTCGTTCCACACCCGTAAGACCTTCGCTCATCTTCGGAACACAATATTTTTCATAAAATCTGATGGCTCAGTGAGGCCTGCATTGCCAGCAAGACAATTAACACTTTCAATGTGACTCATGTGGCTTTGGCAGTTTGATAGTGCTCCGAACCACTGATTCGAAACAAAAGATTTGAAGCTTCATGAAGCGGTGTTTTGAAATCACCCATCACTATTGTTGAATAAAGTCGTTATTTTGTTTTTTGATGCACAAAAAGTATTCTTGTCGCTTCATAACATTAAGGTTGAACTACTGTAGTCACATGAACTGTTTTAAATACGTCTTTAGTAACTTCCTGCGCTTTCAAAGTGTTGTCTTGCTGGCAATGGAGGCCTCACTGATCCATCTGATTTCATCAAAAATATCTTAATTTGTGTTCTTAAAATGAACGAAGGTCTTACAGGTGTGGCACGACATGAGGGTGAGTAATTAATGAAAGAATTTTCATTTTTGGGTGAACTAACCCTTTAAGAATTGACTTGCTTTCAATTCGAAGTGAATTGGCCACACCCACAGGATGTTGAATTGTCAATGACAGGAAGAAGAACTTACTAAATTGCAAAGAAATTCAATTCACAAGTAATTCAATGTTAATATTTTAAGTGCCATTTATTATGTTAAATAAACAAATAATTAACATATTTGAATAAAATATGTATAATACTAAATATTACAATTATGCATCCTGTGTACCTCAAATCAAATGTAAATGTATGAATTATGTCATGAAGTTTTATCTTAATTTAGCTTTGAATGCCTGGTGTTTATTTTGTGTGGCTCATTTGGTAAACATATTAATAGAGTAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000006_11888383_11923287.mRNA True 2437 mRNA 0.43 8 11888192 11924390

Neighbor

gene id symbol gene type direction distance location
CI01000006_11784520_11803562 NA coding upstream 84342 11782031 ~ 11803850 (+)
CI01000006_11751944_11752854 NA coding upstream 134974 11750854 ~ 11753218 (+)
CI01000006_11704767_11714559 WDR34 coding upstream 173531 11704767 ~ 11714661 (+)
CI01000006_11546432_11575289 NSMFA coding upstream 312716 11546432 ~ 11575476 (+)
CI01000006_11476139_11503761 PNPLA7 coding upstream 383594 11476139 ~ 11504598 (+)
CI01000006_12092807_12095434 NA coding downstream 167999 12092389 ~ 12095668 (+)
CI01000006_12176092_12189504 NA coding downstream 251702 12176092 ~ 12189828 (+)
CI01000006_12219317_12222975 TPGS2 coding downstream 294927 12219317 ~ 12223117 (+)
CI01000006_12230746_12235389 NA coding downstream 305157 12229547 ~ 12235525 (+)
CI01000006_12242654_12249350 NOP56, NOP56.L coding downstream 318264 12242654 ~ 12249555 (+)
G47948 NA non-coding upstream 11141 11876815 ~ 11877051 (+)
G47916 NA non-coding upstream 50001 11837752 ~ 11838191 (+)
G47912 NA non-coding upstream 53704 11834232 ~ 11834488 (+)
G47390 NA non-coding upstream 97759 11790211 ~ 11790433 (+)
G47333 NA non-coding upstream 168112 11714686 ~ 11720080 (+)
G48067 NA non-coding downstream 57466 11981856 ~ 11982106 (+)
G48146 NA non-coding downstream 80866 12005256 ~ 12005503 (+)
G48113 NA non-coding downstream 178793 12103183 ~ 12118020 (+)
G48119 NA non-coding downstream 219481 12143871 ~ 12157706 (+)
G48214 NA non-coding downstream 303657 12228047 ~ 12228254 (+)
G47318 NA other upstream 249940 11624267 ~ 11638252 (+)
G47159 NA other upstream 366489 11416229 ~ 11521703 (+)
G47145 NA other upstream 1376386 10485358 ~ 10511806 (+)
G46652 NA other upstream 1728941 10156579 ~ 10159251 (+)
G45416 NA other upstream 3053495 8818814 ~ 8834697 (+)
G48094 NA other downstream 353230 12277620 ~ 12279541 (+)
G48081 NA other downstream 452616 12377006 ~ 12384827 (+)

Expression


Co-expression Network