CI01000006_12223358_12227336


Basic Information

Item Value
gene id CI01000006_12223358_12227336
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 12223312 ~ 12227427 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000006_12223358_12227336.mRNA
AGTACAAATCCCAATGACAGCCATTCAAAGAGCCTGAATTAGCAAAACTGAGGGAGAATATTGCAGAATATTGCAGAAAAAGAGCAAGGAAATGAAACAGGAAGTCACCATAATGGAGGACGGTATTCAAGGCCATATGGCACCTACTGTGGTCTCCATGTTGAAGATCAAGAATGAAAGCATTCGAGTGGTCCTGGCAGAGACCCTCTGCACATTCATCATGATGGTTTTCGGCCTTGGCTGTGTTGCACAAGTGGTCACAGGAAATGGATTTTTTGGAGAGTACCTCAGCATAAATGTAGGCTTTGGGCTGAGTGTGGCTATGGGTGTGCACATTGGTGGAAAAGTGTCAGATGCTATACATCATTACTGTGGGGGCAATTTCACTGTGTCTGGCCCCAAAGCAACAGCTGGGATCTTTGCCACATATCCAGCACCTTACATCTCAATCTACACTGGATTCTTCGACCAGGTTCTGGGCACCGCCATGCTGTTGCTGTGTCTGATGGCTCTGTCAGACCAGAGAAACCAGCCGGTTGTGGCAGGAGGTGAGCCTGTGGGAGTGGGGCTCGTGGTGCTGCTCATTGGTGTCTCTCTGGGGAGCAACAGCGGCTATGCTATCAATCCCACCCGAGACCTGGGGCCAAGAGTCTTCACACTGATGGCAGGATGGGGCATGGAGGTTTTCAGGGCAGGCAATGGATGGTGGTGGGTACCCTTGGTAGCCCCCTTTATTGGTGGAGTGACTGGGGCTTTAATCTACAAAGCATTTGTAGAGCTACACCACCCTGATCTTAAGAGCACTAAGACACAGTCTACAGAAGATCCTGAATGTGTTCCTCTGGAAAAGTACAAGAATAGCACTACAGAGATATCTGTGTGAGACCTGCTTAAGTTAAGGACAAAGAATGGTTCAGGGACCAAATAAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000006_12223358_12227336.mRNA True 929 mRNA 0.49 5 12223312 12227427

Neighbor

gene id symbol gene type direction distance location
CI01000006_12195900_12218340 KIAA1328 coding downstream 4972 12195900 ~ 12218340 (-)
CI01000006_11779363_11781944 NA coding downstream 441324 11779325 ~ 11781988 (-)
CI01000006_11753992_11763149 ODF2, ODF2A coding downstream 460163 11753728 ~ 11763149 (-)
CI01000006_11715016_11740679 SPTAN1, SPNA2 coding downstream 482549 11714705 ~ 11740763 (-)
CI01000006_11672314_11695885 SPECC1L, SPECC1LB coding downstream 527392 11671854 ~ 11695920 (-)
CI01000006_12238313_12238815 NA coding upstream 10886 12238313 ~ 12239051 (-)
CI01000006_12252567_12267751 UBAP2, UBAP2A coding upstream 24504 12251931 ~ 12267751 (-)
CI01000006_12274550_12280868 DCAF12 coding upstream 45654 12273081 ~ 12280868 (-)
CI01000006_12289635_12293874 UBAP1 coding upstream 62088 12289515 ~ 12293874 (-)
CI01000006_12309164_12310107 NUDT2 coding upstream 80136 12307563 ~ 12310107 (-)
G48422 NA non-coding downstream 45118 12171561 ~ 12178194 (-)
G48490 NA non-coding downstream 63229 12159558 ~ 12160083 (-)
G48413 NA non-coding downstream 140685 12082243 ~ 12082627 (-)
G48393 NA non-coding downstream 171628 12051341 ~ 12051684 (-)
G48385 NA non-coding downstream 179548 12043548 ~ 12043764 (-)
G48459 NA non-coding upstream 234977 12462404 ~ 12463511 (-)
G48571 NA non-coding upstream 426202 12653629 ~ 12653890 (-)
G48576 NA non-coding upstream 472045 12699472 ~ 12699782 (-)
G48577 NA non-coding upstream 472642 12700069 ~ 12700268 (-)
G48578 NA non-coding upstream 474163 12701590 ~ 12701857 (-)
CI01000006_11651067_11653761 SMD3, SNRPD3, SNRPD3L, MGC52856 other downstream 568905 11650363 ~ 11654424 (-)
G47658 NA other downstream 1190185 11030911 ~ 11033127 (-)
CI01000006_10453630_10483241 NA other downstream 1734877 10453613 ~ 10484006 (-)
CI01000006_07500281_07507754 NA other downstream 4712356 7500246 ~ 7507976 (-)
CI01000006_06974359_06976736 NA other downstream 5246440 6973224 ~ 6976872 (-)
CI01000006_12348300_12348961 GLRX other upstream 106982 12347180 ~ 12349383 (-)
CI01000006_12569291_12581457 CELL, CEL.2, CEL.1 other upstream 123332 12569205 ~ 12582487 (-)

Expression


Co-expression Network