CI01000006_12242654_12249350 (NOP56, NOP56.L)


Basic Information

Item Value
gene id CI01000006_12242654_12249350
gene name NOP56, NOP56.L
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 12242654 ~ 12249555 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000006_12242654_12249350.mRNA
GTGCTTTTACACGTGCTGTTCGAGCATGCAGCTGGATATGCATTATTCGCTGTCAAAGAAGTGGAAGAGATTGGAATGCTTCTACCTCAGGTGGAGGAAAGTGTCCTAAATATTGGCAAATTCAGTAGCGTAATCCGACTGAGTGCGTTCTTCCCCTTTAAATCCGCCCAGGCTGCTCTGGAAAATATCAATGCCGTTTCAGAAGGAGTTGTCCATGCAGATCTCAAGTTGTTCTTGGAGACCAACCTTTCGTCCGGGATTAAAAAGAAGCCCACGTTGGGGGTGTCTGACGCTAAGATTGGTGCAGCACTTCAGGAAGAGCTTAATCTGTCCATTCAGACTGGAGGTGTTGTAGCTGAAATCATAAGGGGTGTGCGTCTGCACTTCCATTCCCTGGTTAAGGGACTCACCGCTCAGGCCGCGTCCAAAGCTCAATTGGGTTTGGGTCACAGTTACTCCAGAGCCAAAGTCAAGTTCAATGTCAATAGGGCAGACAACATGATCATCCAGTCAATCGCCCTCCTCGACCAGCTGGATAAGGATATCAACACTTTCTCCATGCGTGTGCGTGAATGGTACGGTTACCACTTCCCAGAGCTGATAAAGATAGTGAGTGATAACAGTACATACTGTAAGCTGGCCAAGCTGATAGGGAACCGAAAGGAACTGAGTGAGGAGACTCTGGAAGCTTTAGAGGAGATCACAATGGACAGTGGCAAAGCTCAGGCCATCCTCGACGCGTCCCGCAGCTCTATGGGTATGGATATCTCACCTATTGATCTGATCAACATTGAGAGCTTCTCCAGTCGTGTGGTTTCCCTCACAAAGTACAGACAGGAACTGCAAGAATACCTGCGATCTAAAATGGGCCAGGTGGCGCCAAATCTCGCGGCTCTCATTGGTGATGTGGTCGGTGCCCGTCTCATCTCTCACGCTGGCAGTCTGACAAACCTGGCCAAATATCCAGCCTCCACTGTGCAGATCCTGGGGGCAGAGAAGGCCCTGTTCAGGGCGCTGAAGACCAGAGGAAACACCCCAAAGTACGGTCTCATTTTCCATTCAACGTTCATTGGACGTGCTGCTGCCAAGAACAAGGGTCGCATCTCGCGTTACCTGGCCAACAAGTGTACCATTGCATCGCGCATTGACTGCTTTTCTGAGGTTCCCACATGCGTGTTTGGAGACAAGCTACGTGACCAAGTAGAAGAACGTCTGACCTTCTATGAGACCGGTGAGGCCCCACGAAAGAATCTGGACGTCATGAAAGAAGCTGTTGCAGAGGCTAGTGAGGCGGCTGCTGAAATCAAGCGCAAGCTCGAGAAGAAGGAAAAGAAGAAAAAGAAGCGTGAAAAAAGGAAACTACAAGCGCTTTCCACAGCAGAAGATGAAGTTGAGAAAGCCAATGGTGATGCTGAGGAGAACACGGATACAATAAAGAAGAAAAAGAAAAAGCAGGCAGCTGAGGAAGAGATCACGTCAAACGGTGTTGTTGAGGCCACGCCTGGCAAGAAAAAGAGGAAGATCAATGCTGTGGAGGCGGAGCCTGAGGTGACGGAGGAGGCTGATGTGACACAGGTGGAGAAGAAAAAGAAGAAAAAGAAAAAGCCGGCAGAGGAGGATGAATAAACATGTTCCTTCTGACTGGACTTCAGTATTGTACAGCTTTATTTTTAGTTTCATTTATGAGTTGGACTCATGGTCAAGCGTTTAAGATGTCTGTGAGCTATGCGCAAGGAAAATGATCCGTCATGTTTCTTTTATACAAACTGCTTTATTTCCTGTCACTCTCAAAGCACCTTTCTGAAACAGTTCTTTTACGTGCCTTGCTCTA

Function

symbol description
nop56 Predicted to enable snoRNA binding activity. Acts upstream of or within heart development. Predicted to be located in nucleolus. Predicted to be part of box C/D RNP complex and small-subunit processome. Is expressed in midbrain. Human ortholog(s) of this gene implicated in spinocerebellar ataxia type 36. Orthologous to human NOP56 (NOP56 ribonucleoprotein).

GO:

id name namespace
GO:0032040 small-subunit processome cellular_component

KEGG:

id description
K14564 NOP56; nucleolar protein 56

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000006_12242654_12249350.mRNA True 1831 mRNA 0.48 11 12242654 12249555

Neighbor

gene id symbol gene type direction distance location
CI01000006_12230746_12235389 NA coding upstream 7129 12229547 ~ 12235525 (+)
CI01000006_12219317_12222975 TPGS2 coding upstream 19537 12219317 ~ 12223117 (+)
CI01000006_12176092_12189504 NA coding upstream 52826 12176092 ~ 12189828 (+)
CI01000006_12092807_12095434 NA coding upstream 146986 12092389 ~ 12095668 (+)
CI01000006_11888383_11923287 NA coding upstream 318264 11888192 ~ 11924390 (+)
CI01000006_12298229_12304430 UB2R2, CDC34, UBE2R2, UBE2R2.S, CDC34A, CDC34B coding downstream 48242 12297797 ~ 12304603 (+)
CI01000006_12307031_12307314 NA coding downstream 57476 12307031 ~ 12307319 (+)
CI01000006_12315343_12316143 RFESD coding downstream 65744 12315299 ~ 12316231 (+)
CI01000006_12345828_12346634 NA coding downstream 96273 12345828 ~ 12346920 (+)
CI01000006_12447621_12461167 NA coding downstream 198066 12447621 ~ 12461191 (+)
G48214 NA non-coding upstream 14400 12228047 ~ 12228254 (+)
G48119 NA non-coding upstream 84948 12143871 ~ 12157706 (+)
G48113 NA non-coding upstream 124634 12103183 ~ 12118020 (+)
G48146 NA non-coding upstream 237151 12005256 ~ 12005503 (+)
G48067 NA non-coding upstream 260548 11981856 ~ 11982106 (+)
G48086 NA non-coding downstream 9940 12259495 ~ 12261344 (+)
G48101 NA non-coding downstream 58587 12308142 ~ 12349571 (+)
G48075 NA non-coding downstream 101207 12350762 ~ 12571161 (+)
G48251 NA non-coding downstream 247799 12497354 ~ 12500200 (+)
G48122 NA non-coding downstream 269791 12519346 ~ 12532674 (+)
G47318 NA other upstream 604402 11624267 ~ 11638252 (+)
G47159 NA other upstream 720951 11416229 ~ 11521703 (+)
G47145 NA other upstream 1730848 10485358 ~ 10511806 (+)
G46652 NA other upstream 2083403 10156579 ~ 10159251 (+)
G45416 NA other upstream 3407957 8818814 ~ 8834697 (+)
G48094 NA other downstream 28065 12277620 ~ 12279541 (+)
G48081 NA other downstream 127451 12377006 ~ 12384827 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00010202 nop56,LOC107661748,LOC107739720 coding CM030129.1 CM030129.1 18874762 ~ 18881791 (+)