Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC111194237 |
| gene name | NA |
| gene type | misc |
| species | mexican tetra (Astyanax mexicanus) |
| category of species | ornamental fish |
| Item | Value |
|---|---|
| chromosome id | NC_035912.1 |
| NCBI id | CM008315.1 |
| chromosome length | 41032606 |
| location | 11455485 ~ 11478740 (+) |
| genome version | Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| LOC111194237 | True | 417 | V_segment | 0.46 | 2 | 11455485 | 11456010 |
| TU190441 | False | 167 | lncRNA | 0.49 | 2 | 11455837 | 11478740 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC111194307 | NA | coding | upstream | 2879 | 11451935 ~ 11452606 (+) |
| LOC111194236 | NA | coding | upstream | 4542 | 11450374 ~ 11450943 (+) |
| LOC103030487 | NA | coding | upstream | 16532 | 11438421 ~ 11438953 (+) |
| LOC103030163 | NA | coding | upstream | 19915 | 11433551 ~ 11435570 (+) |
| LOC111194235 | NA | coding | upstream | 26114 | 11428868 ~ 11429371 (+) |
| LOC103022687 | NA | coding | downstream | 3009 | 11481749 ~ 11493706 (+) |
| nol7 | NA | coding | downstream | 42700 | 11521440 ~ 11530907 (+) |
| retreg1 | fam134b | coding | downstream | 97372 | 11576112 ~ 11607386 (+) |
| LOC103030795 | NA | coding | downstream | 165296 | 11644036 ~ 11655408 (+) |
| LOC103026935 | ralyl | coding | downstream | 193868 | 11672608 ~ 11754085 (+) |
| G140671 | NA | non-coding | upstream | 656 | 11454570 ~ 11454829 (+) |
| G140670 | NA | non-coding | upstream | 11279 | 11443841 ~ 11444206 (+) |
| G140563 | NA | non-coding | upstream | 326576 | 11127288 ~ 11128909 (+) |
| G140556 | NA | non-coding | upstream | 450959 | 11003817 ~ 11004526 (+) |
| G140550 | NA | non-coding | upstream | 476395 | 10978574 ~ 10979090 (+) |
| G140676 | epdr1,LOC108437243,LOC107664036,LOC107558964,LOC107713986,LOC108267170 | non-coding | downstream | 22316 | 11501056 ~ 11520012 (+) |
| G140637 | NA | non-coding | downstream | 27924 | 11506664 ~ 11513421 (+) |
| G140666 | NA | non-coding | downstream | 54079 | 11532819 ~ 11535275 (+) |
| G140688 | NA | non-coding | downstream | 91261 | 11570001 ~ 11570202 (+) |
| G140695 | NA | non-coding | downstream | 150676 | 11629416 ~ 11635600 (+) |
| G140659 | NA | other | upstream | 71980 | 11380098 ~ 11383505 (+) |
| G140520 | NA | other | upstream | 656594 | 10798545 ~ 10798891 (+) |
| sppl2b | sppl2b,sppl2,LOC107738168,LOC107591351,LOC107668984 | other | upstream | 1010945 | 10427266 ~ 10444540 (+) |
| G140402 | NA | other | upstream | 1055509 | 10395520 ~ 10399976 (+) |
| G140336 | prkci,LOC107659412,LOC107706387,LOC102783124 | other | upstream | 1110014 | 10311100 ~ 10345471 (+) |
| G140931 | NA | other | downstream | 759248 | 12237988 ~ 12240625 (+) |
| G140930 | NA | other | downstream | 900256 | 12378996 ~ 12381554 (+) |
| G141086 | NA | other | downstream | 1262733 | 12741473 ~ 12743453 (+) |
| LOC103029537 | adcyap1b,LOC103029537,LOC108437223,LOC107713980 | other | downstream | 1364058 | 12842798 ~ 12860327 (+) |
| G141361 | tcea1 | other | downstream | 2376863 | 13855603 ~ 13858605 (+) |
