LOC111194284


Basic Information

Item Value
gene id LOC111194284
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 6011579 ~ 6012305 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>LOC111194284
TTGTGCTACTGAGCTGCTGTAAGAAGGGAAGTGAGGGAAGCTGAAGTGAATTATGAACATTTAAACACTAGAGCAACactgagctgcagcaccacTGTTCAGTTATGACTCGTCTTCATCACTGGTGGCTTCCTTTTCTGATTTTAGCAGGTTCCACTTCTGGTGAGGGAATAGAACCAAGTTTTTCCACTGTTAATGTCCTACAGGGAGGTTCTGTTACCCTGTCCTGCAAATACAATGGATCTAATCAAGTCGATTATCTGCTGTGGTACCGTCAGTATTCCAGATCCAGACCTGAGTTCCTGATCTTAATCAATGAAGCTAACCATGAGATTAAAGCTGATCCTCCAGTTTATGGAGTTTCTGCAAAagtaaatgaaaagaaaaatggtGTGGATCTGGAGATCTCCTCTACTGCTGTAtcagactctgctctctactactgTTCTCTGCAGCCCACAGTGACAGGAAACCCACCAAACACTGTACGAAAACTTTTTATCTGTGTATTGTTGGCAAATCTGCACTACCCCCTGGATTATTTTGATGGACGCCCAGAGTAATAGAAAGACGGAATGCTTAAATCTTCAGCAAAATAACAGTTTATTatcaataaatgaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC111194284 True 621 V_segment 0.42 2 6011579 6012305

Neighbor

gene id symbol gene type direction distance location
LOC103047673 NA coding upstream 7667 6001986 ~ 6003912 (+)
LOC111194285 NA coding upstream 45475 5964234 ~ 5966104 (+)
LOC111194287 NA coding upstream 57888 5952966 ~ 5953691 (+)
LOC111194288 NA coding upstream 65886 5944123 ~ 5945693 (+)
atp6v0b atp6v0b,LOC102788333 coding upstream 83717 5917566 ~ 5927862 (+)
LOC103047152 NA coding downstream 3909 6016214 ~ 6018135 (+)
LOC103031246 NA coding downstream 3928 6016233 ~ 6189636 (+)
LOC103030609 NA coding downstream 179152 6191457 ~ 6224897 (+)
LOC111194230 NA coding downstream 215235 6227540 ~ 6232060 (+)
LOC111194283 NA coding downstream 215237 6227542 ~ 6246723 (+)
G139219 NA non-coding upstream 25506 5985416 ~ 5986073 (+)
G139170 NA non-coding upstream 395690 5614294 ~ 5615889 (+)
G139139 NA non-coding upstream 568614 5442556 ~ 5442965 (+)
LOC111194278 NA non-coding upstream 601465 5407208 ~ 5410114 (+)
G139117 NA non-coding upstream 658854 5352155 ~ 5352725 (+)
LOC111194227 NA non-coding downstream 96358 6108663 ~ 6109216 (+)
G139259 NA non-coding downstream 98265 6110570 ~ 6110988 (+)
LOC111194228 NA non-coding downstream 113959 6126264 ~ 6129711 (+)
LOC111194290 NA non-coding downstream 123653 6135958 ~ 6136573 (+)
LOC103047845 NA non-coding downstream 127342 6139647 ~ 6140364 (+)
G139154 NA other upstream 555575 5455480 ~ 5456004 (+)
LOC103041273 zgc:110158,LOC108428898,LOC108267812,LOC107678694,LOC105906991,LOC107690032,LOC107721784,LOC102197062 other upstream 1004573 4889873 ~ 5007006 (+)
LOC103026815 LOC108428843 other upstream 1288805 4673380 ~ 4722774 (+)
LOC103039271 LOC108428890,LOC108268340 other upstream 1302916 4703346 ~ 4708663 (+)
G138839 NA other upstream 1765715 4237609 ~ 4245864 (+)
LOC107197321 NA other downstream 47112 6059417 ~ 6060050 (+)
LOC103021569 NA other downstream 133658 6145963 ~ 6155929 (+)
G139268 NA other downstream 147415 6159720 ~ 6164164 (+)
LOC103028159 NA other downstream 223129 6235434 ~ 6242571 (+)
G139282 NA other downstream 254511 6266816 ~ 6267387 (+)

Expression


Co-expression Network