LOC111194287


Basic Information

Item Value
gene id LOC111194287
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 5952966 ~ 5953691 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>LOC111194287
CAGCACACTGTCATGCTGGTGTACTAAAGAGCTGAAAGTCAGTGTGTTCTTCTCCCAGTGTGTGCTACACCACCATGATCATTTTCACTGTACTGCTGCTCTCTGCTCTTACAGGTAACAGAGCTGAAGACGTCATCACTCCTAGCAGAGACGCTGTTTTTGCTGTTGAAGGTCAGAatgtttctctctcctgtaactACACTGTAACTGGAACCAGTTATGGTCTTCACTGGTACCGACAGTATTCAGGATCATCTCCTCAGTTCCTCATACTGGACTATGCAGGGAGCATTACTGAAGCTCAACCTCCAGTTCCTAGAATATCCATCAACCatcaaaaagaaaagaggaaagtGGATCTGATCATCTCCTCTACTGCAGTAtcagactctgctctctactactgCGCTCTGAAGCCCACAGtgacagaaacccaccaaacaCTGTACTAAAACTTTACTTGTGAAATATGTAGAAACACTTATATTTCAGGAGGGGGCGCTGTTTCTCTTCTGCTTCTTTATCTTCAGCTTCCTCACCATTCAGGTTAGAACATCAGTCTGCTTTGGAACATCAGTCATCATGTTGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC111194287 True 589 V_segment 0.44 2 5952966 5953691

Neighbor

gene id symbol gene type direction distance location
LOC111194288 NA coding upstream 7273 5944123 ~ 5945693 (+)
atp6v0b atp6v0b,LOC102788333 coding upstream 25104 5917566 ~ 5927862 (+)
LOC103034049 LOC108430294,LOC103359748,LOC104917724,LOC100692768 coding upstream 340836 5599753 ~ 5612130 (+)
slc6a9 slc6a9,LOC107700995,LOC107730788,LOC107739827,LOC107557089 coding upstream 390173 5460484 ~ 5562793 (+)
klf17 LOC103372686,LOC107599908,LOC107657420,LOC107739832 coding upstream 517922 5432274 ~ 5435044 (+)
LOC111194285 NA coding downstream 10543 5964234 ~ 5966104 (+)
LOC103047673 NA coding downstream 48295 6001986 ~ 6003912 (+)
LOC111194284 NA coding downstream 57888 6011579 ~ 6012305 (+)
LOC103047152 NA coding downstream 62523 6016214 ~ 6018135 (+)
LOC103031246 NA coding downstream 62542 6016233 ~ 6189636 (+)
G139170 NA non-coding upstream 337077 5614294 ~ 5615889 (+)
G139139 NA non-coding upstream 510001 5442556 ~ 5442965 (+)
LOC111194278 NA non-coding upstream 542852 5407208 ~ 5410114 (+)
G139117 NA non-coding upstream 600241 5352155 ~ 5352725 (+)
G139115 NA non-coding upstream 601287 5351443 ~ 5351679 (+)
G139219 NA non-coding downstream 31725 5985416 ~ 5986073 (+)
LOC111194227 NA non-coding downstream 154972 6108663 ~ 6109216 (+)
G139259 NA non-coding downstream 156879 6110570 ~ 6110988 (+)
LOC111194228 NA non-coding downstream 172573 6126264 ~ 6129711 (+)
LOC111194290 NA non-coding downstream 182267 6135958 ~ 6136573 (+)
G139154 NA other upstream 496962 5455480 ~ 5456004 (+)
LOC103041273 zgc:110158,LOC108428898,LOC108267812,LOC107678694,LOC105906991,LOC107690032,LOC107721784,LOC102197062 other upstream 945960 4889873 ~ 5007006 (+)
LOC103026815 LOC108428843 other upstream 1230192 4673380 ~ 4722774 (+)
LOC103039271 LOC108428890,LOC108268340 other upstream 1244303 4703346 ~ 4708663 (+)
G138839 NA other upstream 1707102 4237609 ~ 4245864 (+)
LOC107197321 NA other downstream 105726 6059417 ~ 6060050 (+)
LOC103021569 NA other downstream 192272 6145963 ~ 6155929 (+)
G139268 NA other downstream 206029 6159720 ~ 6164164 (+)
LOC103028159 NA other downstream 281743 6235434 ~ 6242571 (+)
G139282 NA other downstream 313125 6266816 ~ 6267387 (+)

Expression


Co-expression Network