LOC111194289


Basic Information

Item Value
gene id LOC111194289
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 6143375 ~ 6143901 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>LOC111194289
AGAGTCTAAAGCTGGAGGTCTgatctcactctcactctcacagcAATCATGCTGCTCTTCTTCTCAGTTTTCATGCTCATCTTCAGTATCGGTAAAACTTCTGACATAATCATACAGAACACAACCAGtgtaactgtaaataaaggCAGCAGCACCACACTGTCCTGTTCTTATACAGGATCTCCTTACAGTCTCCACTGGTATCGGCAAAAGCCTGGATCAAGACCAGAGTTTCTGATTCTGATTGATGAAGCCAGTGAACACATTAATAAAGCTCAACCACCTGACCATCGATTCTTCATCAAACTTCATAAAAAGGAAAAGACATGGGATCTGGAGATCTCCTCTACTGCAGTAtcagactctgctctctactactgCGCTCTGCAGCCCACAGTGACAGAAACCCATCAAACACTGTACTAAAAGTGTTCTTGTAAATCAAAAACA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC111194289 True 450 V_segment 0.42 2 6143375 6143901

Neighbor

gene id symbol gene type direction distance location
LOC103047152 NA coding upstream 125240 6016214 ~ 6018135 (+)
LOC111194284 NA coding upstream 131070 6011579 ~ 6012305 (+)
LOC103047673 NA coding upstream 139463 6001986 ~ 6003912 (+)
LOC111194285 NA coding upstream 177271 5964234 ~ 5966104 (+)
LOC111194287 NA coding upstream 189684 5952966 ~ 5953691 (+)
LOC103030609 NA coding downstream 47556 6191457 ~ 6224897 (+)
LOC111194230 NA coding downstream 83639 6227540 ~ 6232060 (+)
LOC111194283 NA coding downstream 83641 6227542 ~ 6246723 (+)
LOC103029132 NA coding downstream 105624 6249525 ~ 6253963 (+)
nmnat2 nmnat2,LOC106569066 coding downstream 333531 6477432 ~ 6504960 (+)
LOC111194229 NA non-coding upstream 1777 6141005 ~ 6141598 (+)
LOC103047845 NA non-coding upstream 3011 6139647 ~ 6140364 (+)
LOC111194290 NA non-coding upstream 6802 6135958 ~ 6136573 (+)
LOC111194228 NA non-coding upstream 13664 6126264 ~ 6129711 (+)
G139259 NA non-coding upstream 32387 6110570 ~ 6110988 (+)
G139224 NA non-coding downstream 47464 6191365 ~ 6273750 (+)
G139230 NA non-coding downstream 58911 6202812 ~ 6204652 (+)
G139301 NA non-coding downstream 262558 6406459 ~ 6408590 (+)
G139298 NA non-coding downstream 293717 6437618 ~ 6443166 (+)
G139326 NA non-coding downstream 394148 6538049 ~ 6549440 (+)
LOC107197321 NA other upstream 83325 6059417 ~ 6060050 (+)
G139154 NA other upstream 687371 5455480 ~ 5456004 (+)
LOC103041273 zgc:110158,LOC108428898,LOC108267812,LOC107678694,LOC105906991,LOC107690032,LOC107721784,LOC102197062 other upstream 1136369 4889873 ~ 5007006 (+)
LOC103026815 LOC108428843 other upstream 1420601 4673380 ~ 4722774 (+)
LOC103021569 NA other downstream 2062 6145963 ~ 6155929 (+)
G139268 NA other downstream 15819 6159720 ~ 6164164 (+)
LOC103028159 NA other downstream 91533 6235434 ~ 6242571 (+)
G139282 NA other downstream 122915 6266816 ~ 6267387 (+)
dhx9 dhx9 other downstream 574337 6718238 ~ 6742069 (+)

Expression


Co-expression Network