LOC111194307


Basic Information

Item Value
gene id LOC111194307
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 11451935 ~ 11452606 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>LOC111194307
AACCAGATGCTGACTGTAACCCAGGAAATGACATCACAGACTCATAACTGATAACACTGCTGCGTTCACGCAAACAGGGTGGAGGTGGTTGAGGTGCAGGTGAGAGCATTTCATGAAGAAATCACTTTTTCTCAACTGAATGAAATATGAATATAGCTGTGTACGCTGTTCTTTTCTCACTGACTGCAGTGGGAGTTCTGGGACTGACGGTGGAACAAAGTCAGCTCTCCTGGACAAAACCTCTGGGCAAGACAGTTTACATAAACTGTAAAGTGACTGATCTAGCCAATGATGAGTACGTCCACTGGTACCATCAGAAAGATGGAGAAGCTCTGAAAAGGATTCTGTATGTTAATAAACAAGCCACGAGCACTGTTCATGATCCAAACTATCCTGAAGCAAAAGACTTCTCTGTGACTCTAGAGAAGAGTGATGCAGGTGATACGTATACTCTGAAATTAGGCGCAGTGAAGCTCAACCATGCTGGAGTTTATTACTGTGCCTGCTGGGTCTATGACAGCAGCCACAGTGAGATAAACTGCTCACATCCTGTACAATAACTACTGT

Function

GO: NA

KEGG:

id description
ko04060 Cytokine-cytokine receptor interaction

RNA

RNA id representative length rna type GC content exon number start site end site
LOC111194307 True 567 V_segment 0.44 2 11451935 11452606

Neighbor

gene id symbol gene type direction distance location
LOC111194236 NA coding upstream 992 11450374 ~ 11450943 (+)
LOC103030487 NA coding upstream 12982 11438421 ~ 11438953 (+)
LOC103030163 NA coding upstream 16365 11433551 ~ 11435570 (+)
LOC111194235 NA coding upstream 22564 11428868 ~ 11429371 (+)
LOC111194306 NA coding upstream 25108 11417891 ~ 11426827 (+)
LOC103022687 NA coding downstream 29143 11481749 ~ 11493706 (+)
nol7 NA coding downstream 68834 11521440 ~ 11530907 (+)
retreg1 fam134b coding downstream 123506 11576112 ~ 11607386 (+)
LOC103030795 NA coding downstream 191430 11644036 ~ 11655408 (+)
LOC103026935 ralyl coding downstream 220002 11672608 ~ 11754085 (+)
G140670 NA non-coding upstream 7729 11443841 ~ 11444206 (+)
G140563 NA non-coding upstream 323026 11127288 ~ 11128909 (+)
G140556 NA non-coding upstream 447409 11003817 ~ 11004526 (+)
G140550 NA non-coding upstream 472845 10978574 ~ 10979090 (+)
G140543 NA non-coding upstream 502450 10949255 ~ 10949485 (+)
G140671 NA non-coding downstream 1964 11454570 ~ 11454829 (+)
G140676 epdr1,LOC108437243,LOC107664036,LOC107558964,LOC107713986,LOC108267170 non-coding downstream 48450 11501056 ~ 11520012 (+)
G140637 NA non-coding downstream 54058 11506664 ~ 11513421 (+)
G140666 NA non-coding downstream 80213 11532819 ~ 11535275 (+)
G140688 NA non-coding downstream 117395 11570001 ~ 11570202 (+)
G140659 NA other upstream 68430 11380098 ~ 11383505 (+)
G140520 NA other upstream 653044 10798545 ~ 10798891 (+)
sppl2b sppl2b,sppl2,LOC107738168,LOC107591351,LOC107668984 other upstream 1007395 10427266 ~ 10444540 (+)
G140402 NA other upstream 1051959 10395520 ~ 10399976 (+)
G140336 prkci,LOC107659412,LOC107706387,LOC102783124 other upstream 1106464 10311100 ~ 10345471 (+)
LOC111194237 NA other downstream 2879 11455485 ~ 11478740 (+)
G140931 NA other downstream 785382 12237988 ~ 12240625 (+)
G140930 NA other downstream 926390 12378996 ~ 12381554 (+)
G141086 NA other downstream 1288867 12741473 ~ 12743453 (+)
LOC103029537 adcyap1b,LOC103029537,LOC108437223,LOC107713980 other downstream 1390192 12842798 ~ 12860327 (+)

Expression


Co-expression Network