G137627


Basic Information

Item Value
gene id G137627
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 193309 ~ 193938 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU186188
gtttgatggtttgtgatcatccatcttcctcttgattatattccagaggattttaatttagTCAAAGAAACTTAGCAGCTAAGTGCTCTCTCTtactctaattcttctcttctctgctaaaactgagactcagtccttaatcatgacgtcttcctgtagcagttttttttctccagttttcacCATGCAGTTCCAGCAGTAATTTACTACAGACTAAGAGTTTGGAAATTCACATTATTACGTCCTTTTTTTTAAGTCCATATTATTCCCcttgtttttcagtttattgCTAATTTATaccattttagttttttctctgGACCTGaggagcttaaatggcaaaaataaacaaaaaaactgtggtTGTTCTAtaacttttgaccggtagtgtATAAATATGGAATACCTGCTTCTGCCCTTTGCCAACTACAAtttataaaaagtatataaataataaaacaatgataaatgctaaaaatacattttctttgtttgtacatttttttattctgttactGTCAGTGTTAAacactgtgtgttttc
>TU186190
gtttgatggtttgtgatcatccatcttcctcttgattatattccagaggattttaatttagTCAAAGAAACTTAGCAGCTAAGTGCTCTCTCTtactctaattcttctcttctctgctaaaactgagactcagtccttaatcatgacgtcttcctgtagcagttttttttctccagttttcacCATGCAGTTCCAGCAGTAATTTACTACAGACTAAGAGTTTGGAAATTCACATTATTACGTCCTTTTTTTTAAGTCCATATTATTCCCcttgtttttcagtttattgCTAATTTATaccattttagttttttctctgGACCTGaggagcttaaatggcaaaaataaacaaaaaaactgtggtTGTTCTAtaacttttgaccggtagtgtATAAATATGGAATACCTGCTTCTGCCCTTTGCCAACTACAAtttataaaaagtatataaataataaaacaatgataaatgctaa
>TU186191
tctcctccaccagtcttacacactgcttttggataacgttatgctgctttactcctggtgcaaaaattcaagcagttcagtttggtggtttgatggtttgtgatcatccatcttcctcttgattatattccagaggattttaatttagTCAAAGAAACTTAGCAGCTAAGTGCTCTCTCTtactctaattcttctcttctctgctaaaactgagactcagtccttaatcatgacgtcttcctgtagcagttttttttctccagttttcacCATGCAGTTCCAGCAGTAATTTACTACAGACTAAGAGTTTGGAAATTCACATTATTACGTCCTTTTTTTTAAGTCCATATTATTCCCcttgtttttcagtttattgCTAATTTATaccattttagttttttctctgGACCTGaggagcttaaatggcaaaaataaacaaaaaaactgtggtTGTTCTAtaacttttgaccggtagtgtATAAATATGGAATACCTGCTTCTGCCCTTTGCCAACTACAAtttataaaaagtatataaataataaaacaatgataaatgctaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU186188 False 543 lncRNA 0.32 1 193396 193938
TU186190 False 475 lncRNA 0.33 1 193396 193870
TU186191 True 562 lncRNA 0.34 1 193309 193870

Neighbor

gene id symbol gene type direction distance location
dars2 LOC104960769,LOC104948518 coding upstream 312 177663 ~ 192997 (+)
klhl20 klhl20 coding upstream 20260 161857 ~ 173049 (+)
LOC103047317 kif2c coding upstream 107198 75683 ~ 86111 (+)
LOC103023540 kiss1ra,LOC108411985,LOC107657423,LOC107599909,LOC107722062 coding upstream 152561 31377 ~ 40748 (+)
astn1 astn1 coding downstream 244760 438698 ~ 694723 (+)
tnr tnr,LOC107658355 coding downstream 620900 814838 ~ 969334 (+)
kiaa0040 kiaa0040 coding downstream 792483 986421 ~ 987706 (+)
cacybp NA coding downstream 846952 1040890 ~ 1044717 (+)
plk3 plk3,LOC107722069,LOC107563563,LOC107658359,LOC107726922 coding downstream 852329 1046267 ~ 1057525 (+)
G137639 cenpl non-coding upstream 16671 175080 ~ 176638 (+)
G137629 NA non-coding upstream 63070 127102 ~ 130239 (+)
G137630 NA non-coding upstream 64610 128168 ~ 128699 (+)
G137596 NA non-coding upstream 124447 55706 ~ 68862 (+)
G137669 NA non-coding downstream 149930 343868 ~ 357819 (+)
G137670 NA non-coding downstream 152787 346725 ~ 354561 (+)
G137725 NA non-coding downstream 332310 526248 ~ 527067 (+)
G137729 NA non-coding downstream 460283 654221 ~ 654449 (+)
G137737 NA non-coding downstream 555903 749841 ~ 750410 (+)
G137614 NA other upstream 98736 93285 ~ 94573 (+)
rfwd2 rfwd2,LOC107658354 other downstream 568777 762715 ~ 781196 (+)
G137756 kiaa0040 other downstream 787042 980980 ~ 988638 (+)
mrps14 mrps14 other downstream 843923 1037861 ~ 1039970 (+)
G137826 LOC108430781,LOC108267757 other downstream 1297878 1491816 ~ 1499956 (+)
LOC103042893 vps4b,LOC107727524,LOC107681797,LOC107710065 other downstream 1641539 1835477 ~ 1851313 (+)

Expression


Co-expression Network