G137782


Basic Information

Item Value
gene id G137782
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 1101388 ~ 1226517 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU186427
caaaaatacacaAATCATCAGTATTTTTTAATCAGTAAAAATCATATTGTGCTACAAAATTTTAGACTACTAATCACATtgtttaaaataacttaaaaacaccAGCTGACTTTAGAACAGGTGCAGGTAAgctgggggaatgactacacactgatgtcGAATGAATTCGTTCAATGAAAaccaagtatctccatttttgtcgatttttatttacttcataatttgaacagacaaactgtctcttacactgtgtcaaaaaatattgatgaacaaaccaataaaaatacttcactaacacttaaaataaactctttttacattgaaagtTTGGAagttacttgtttttcattcgacagcgacaatatgtacaaaattaatgaaatcacttaaatattgATTCATGGAATGATTAGAaaaaaagtcattgatcatctattagtctggaaaagattacaaatcacaaatcattatttctaaagttgtaggactattattcacaaatggagaaaacatggaacactggtgaaccttcccaggagtgaccagcctatGGAAATTGccccaaaagggcatgaacaactcatccaggaggtcacaccAGAGAAGAACCCTGAACAACATCTGAAcatctaaataaataacagcAGGTCTCACTTTATTcagttaatgattcaataataagaaaaaaagttgaGACTAGAACTCAAACATGGTTTctatgagagagagataaaaaactCCCACAAAGAccagtcatacatttaccaatAAACATCTTAATGATCCAAAACCaagataataagaaaaaaatgtacgtatgaaaaaaaacaaaaacaaaaaaatgaacgAAAGCTTTATTTTTATGGAGGAATGGGGTTTCTTTGActaaagagagagtgtgtaagaaacagagtgtgtgtgagtgtgtaagtaaacgagagaaaaaagagagagaatgtgtgagtgagagagtgtgtctTTACCATTTCGGTTGTATTGTTTCTACTATACTGGTTAAgtgagaaaggaaaaaaaatgaagaaaaacgaattaaaaatgaagaaaataaaacctTCTCTCTTgagttgttatttattttgcttagtTGCTGAATTATCTGTTAGACATCTTTAAGGTTTCTAGTCATTAGCACTTCACCAATtctacaaacaaaacaaaaccccCAGAGCATCATAGCAGCCACCTTAAATACCATAAAACACAAACTGCCAGACAAGGCACAGCAATTAGTCAGCAACCCCATAAAACACAAGAGAAACCGTTTCACACAGAAACC

Function

GO:

id name namespace
GO:0002040 sprouting angiogenesis biological_process

KEGG:

id description
ko00600 Sphingolipid metabolism
ko00511 Other glycan degradation

RNA

RNA id representative length rna type GC content exon number start site end site
TU186427 True 1297 lncRNA 0.33 3 1101388 1226517

Neighbor

gene id symbol gene type direction distance location
LOC103047078 NA coding upstream 11877 1084808 ~ 1089511 (+)
LOC103047582 apol1,LOC107103896 coding upstream 19067 1070007 ~ 1082321 (+)
plk3 plk3,LOC107722069,LOC107563563,LOC107658359,LOC107726922 coding upstream 43863 1046267 ~ 1057525 (+)
cacybp NA coding upstream 56671 1040890 ~ 1044717 (+)
kiaa0040 kiaa0040 coding upstream 113682 986421 ~ 987706 (+)
LOC103046777 NA coding downstream 14718 1241235 ~ 1245769 (+)
rbm33 rbm33 coding downstream 74068 1300585 ~ 1335193 (+)
rnf32 NA coding downstream 210423 1436940 ~ 1449027 (+)
LOC111194186 NA coding downstream 262788 1489305 ~ 1491340 (+)
cdc73 cdc73 coding downstream 338413 1564930 ~ 1594076 (+)
G137754 NA non-coding upstream 89393 906454 ~ 1011995 (+)
LOC103021626 NA non-coding upstream 115234 980933 ~ 986154 (+)
G137737 NA non-coding upstream 350978 749841 ~ 750410 (+)
G137729 NA non-coding upstream 446939 654221 ~ 654449 (+)
G137725 NA non-coding upstream 574321 526248 ~ 527067 (+)
G137839 NA non-coding downstream 124757 1351274 ~ 1455746 (+)
G137850 NA non-coding downstream 213746 1440263 ~ 1440805 (+)
G137856 NA non-coding downstream 281748 1508265 ~ 1509554 (+)
G137857 NA non-coding downstream 283136 1509653 ~ 1512939 (+)
G137858 dcaf8 non-coding downstream 289962 1516479 ~ 1517928 (+)
mrps14 mrps14 other upstream 61418 1037861 ~ 1039970 (+)
G137756 kiaa0040 other upstream 112750 980980 ~ 988638 (+)
rfwd2 rfwd2,LOC107658354 other upstream 320192 762715 ~ 781196 (+)
G137614 NA other upstream 1006815 93285 ~ 94573 (+)
G137826 LOC108430781,LOC108267757 other downstream 265299 1491816 ~ 1499956 (+)
LOC103042893 vps4b,LOC107727524,LOC107681797,LOC107710065 other downstream 608960 1835477 ~ 1851313 (+)
G137929 NA other downstream 796238 2022755 ~ 2024386 (+)
LOC103045052 cfap57,LOC106594647 other downstream 1673958 2900475 ~ 2936129 (+)
LOC103024858 NA other downstream 1855539 3082056 ~ 3084865 (+)

Expression


Co-expression Network