G137826 (LOC108430781,LOC108267757)


Basic Information

Item Value
gene id G137826
gene name LOC108430781,LOC108267757
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 1491816 ~ 1499956 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU186489
TTACTTTACCatcatttttattgaaatttatATGTAGAACTTACCGGAACGAgggtgacataaaaaaaaaaaaaaacacgcaaaTATTAACATACATACTGTTTCCAGGATGGAGGAGGAAGTGTGATCTCAGCCCCCCACTCAGTAATAACAGAGCCAGAGGAAAATAACCCACTGTTAAAATAACCAGAGTCCACAGAAATACACTCTACTCTTCTCTTTAGAGGAGTGTCTttactcagacacacacacactcacacacactccattgCTCTTCACTTGGAACAAtcgagaaagaaagaaataaagaaaaaagatctGAATCCGAAAACATGAACCGGTTTCTAAAATGTGTGGGAATGATGAGGAATgtattaaaaactacttttttttttattcctaagagggaaagaaaaaacatgGTCTGGAGTAAATGAGTGTGGCTTTAAAATTACACTGAGCTTCataacaagtgtgtgtgtgtgtgtgtgtgtgtctttacaTTCTTTACGTAACGAAAAtatgagattaaaaaaaatatataataataaacaaccaTAATTCTGATAAAAAGGGTTTGGGAGGAGCAGACCTGTGTTGTTACTccagacgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttgtgtatagtgtctGTAGATTttctgtatagtgtgtgtgtgtgtttatctaaGGAGAGTTTATGGGTCATCTCCATTGACGCTGTCGCCGTCGTCTTCTCCTTCCTCATGCtctccctcctcttcctcttctccttcCTCTTCTTCATTCTCTCCTCCGTGACTCTTCACctcttcctcctccagcaggtcaccctcctcttcctcctcctcttcagaGTCGTTGATCTCCTGCTCCTCCCGCTCTCGCTCCTTCTTAACGCTGGAGTGCTGCTGAGAAGAAGCTTCGCCTGCCTCAGTCTTCAACACCTTACCATCAGACTTCTTGCTGTGATCCTTCTCCATGCGATCTAAGCTTTCCAGAAGATAGTCCACCTTGTGCTTGATCTGAGCCAGTTCCCTCTTGATGGTCTGGAGGTCATCCACTTTAATGGCTCGCGATGAGGAGCGCTGGCTGCCTTTGGAGGACGAGGAAAAGCTGGACTTGGTCCGGCGGCTTCCTCCGCTCATGCTGACCCGAGCCCTTTTGGAGGGGATGACTGCCCGcgagagggggggagggggtggcGGGACGCGGGATGGGTAGGCATACATCCTGTCGTAGTAATCTCTTTGGAAATCATAGTCCAGCTCGAAGGTGGAACTGCTGTACATATCTCCTGCTGGACGCTTCGTCGTCTGCGACCTGTGAGGTTTGGGTTCACCTGCCAGGTTGATGTCCAGCACCTGCCCCACGATCATCCGGCCGTCCTCCCCGGCCACCGCGGACCGGGCGTTCCTCTCGTTGGCGAACTGGACGAAGGCGTAGCCCTTGTGCACAGAGCAGCCCACGATCTTCCCGTACTTGCTGAAGATGGCCTCCACATCGGCCTTGGTCACCAGCATGGTGTTCAGGTTTCCGATGAAGACCCGCGAGTTCAGGGAGCGAGGGGTCCGTCTTGTTGGTCACGTTGCTCGCCATCAGGAGGCTGCTGGAGGGGGATCGGTCCATAGCGTCTGTGGCTTGCAGTCgttcgtctgtctgtctgtctgtctgcggTTTGTCACTGAGGGATGGGGCCAGTGTATGCAGGCTGGGGGAGTGGGGGGGTCTTGGGTGATTTCAGCCAAAACTACAATTCCCAGCAGCACGGCCCC
>TU186490
CAGGTGTAACTCTTACCCAGCACCTGCCCCACGATCATCCGGCCGTCCTCCCCGGCCACCGCGGACCGGGCGTTCCTCTCGTTGGCGAACTGGACGAAGGCGTAGCCCTTGTGCACAGAGCAGCCCACGATCTTCCCGTACTTGCTGAAGATGGCCTCCACATCGGCCTTGGTCACCAGCATGGTGTTCAGGTTTCCGATGAAGACCCGCGAGTTCAGGGAGCGAGGGGTCCGTCTTGTTGGTCACGTTGCTCGCCATCAGGAGGCTGCTGGAGGGGGATCGGCTGgactcaTCCATAGCGTCTGTGGCTTGCAGTCgttcgtctgtctgtctgtctgtctgcggTTTGTCACTGAGGGATGGGGCCAGTGTATGCAGGCTGGGGGAGTGGGGGGGTCTTGGGTGATTTCAGCCAAAACTACAATTCCCAGCAGCACGGCCCC
>TU186491
TTACTTTACCatcatttttattgaaatttatATGTAGAACTTACCGGAACGAgggtgacataaaaaaaaaaaaaaacacgcaaaTATTAACATACATACTGTTTCCAGGATGGAGGAGGAAGTGTGATCTCAGCCCCCCACTCAGTAATAACAGAGCCAGAGGAAAATAACCCACTGTTAAAATAACCAGAGTCCACAGAAATACACTCTACTCTTCTCTTTAGAGGAGTGTCTttactcagacacacacacactcacacacactccattgCTCTTCACTTGGAACAAtcgagaaagaaagaaataaagaaaaaagatctGAATCCGAAAACATGAACCGGTTTCTAAAATGTGTGGGAATGATGAGGAATgtattaaaaactacttttttttttattcctaagagggaaagaaaaaacatgGTCTGGAGTAAATGAGTGTGGCTTTAAAATTACACTGAGCTTCataacaagtgtgtgtgtgtgtgtgtgtgtgtctttacaTTCTTTACGTAACGAAAAtatgagattaaaaaaaatatataataataaacaaccaTAATTCTGATAAAAAGGGTTTGGGAGGAGCAGACCTGTGTTGTTACTccagacgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttgtgtatagtgtctGTAGATTttctgtatagtgtgtgtgtgtgtttatctaaGGAGAGTTTATGGGTCATCTCCATTGACGCTGTCGCCGTCGTCTTCTCCTTCCTCATGCtctccctcctcttcctcttctccttcCTCTTCTTCATTCTCTCCTCCGTGACTCTTCACctcttcctcctccagcaggtcaccctcctcttcctcctcctcttcagaGTCGTTGATCTCCTGCTCCTCCCGCTCTCGCTCCTTCTTAACGCTGGAGTGCTGCTGAGAAGAAGCTTCGCCTGCCTCAGTCTTCAACACCTTACCATCAGACTTCTTGCTGTGATCCTTCTCCATGCGATCTAAGCTTTCCAGAAGATAGTCCACCTTGTGCTTGATCTGAGCCAGTTCCCTCTTGATGGTCTGGAGGTCATCCACTTTAATGGCTCGCGATGAGGAGCGCTGGCTGCCTTTGGAGGACGAGGAAAAGCTGGACTTGGTCCGGCGGCTTCCTCCGCTCATGCTGACCCGAGCCCTTTTGGAGGGGATGACTGCCCGcgagagggggggagggggtggcGGGACGCGGGATGGGTAGGCATACATCCTGTCGTAGTAATCTCTTTGGAAATCATAGTCCAGCTCGAAGGTGGAACTGTACATATCTCCTGCTGGACGCTTCGTCGTCTGCGACCTGTGAGGTTTGGGTTCACCTGCCAGGTTGATGTCCAGCACCTGCCCCACGATCATCCGGCCGTCCTCCCCGGCCACCGCGGACCGGGCGTTCCTCTCGTTGGCGAACTGGACGAAGGCGTAGCCCTTGTGCACAGAGCAGCCCACGATCTTCCCGTACTTGCTGAAGATGGCCTCCACATCGGCCTTGGTCACCAGCATGGTGTTCAGGTTTCCGATGAAGACCCGCGAGTTCAGGGAGCGAGGGGTCCGTCTTGTTGGTCACGTTGCTCGCCATCAGGAGGCTGCTGGAGGGGGATCGGTCCATAGCGTCTGTGGCTTGCAGTCgttcgtctgtctgtctgtctgtctgcggTTTGTCACTGAGGGATGGGGCCAGTGTATGCAGGCTGGGGGAGTGGGGGGGTCTTGGGTGATTTCAGCCAAAACTACAATTCCCAGCAGCACGGCCCC

Function

NR:

description
PREDICTED: heterogeneous nuclear ribonucleoprotein C-like isoform X5

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU186489 True 1785 lncRNA 0.49 8 1491816 1499956
TU186490 False 443 TUCP 0.61 2 1497299 1499956
TU186491 False 1782 lncRNA 0.49 8 1491816 1499956
Loading

Neighbor

gene id symbol gene type direction distance location
LOC111194186 NA coding upstream 476 1489305 ~ 1491340 (+)
rnf32 NA coding upstream 42789 1436940 ~ 1449027 (+)
rbm33 rbm33 coding upstream 156623 1300585 ~ 1335193 (+)
LOC103046777 NA coding upstream 246047 1241235 ~ 1245769 (+)
insig1 LOC108412812 coding upstream 267987 1217510 ~ 1223829 (+)
cdc73 cdc73 coding downstream 64974 1564930 ~ 1594076 (+)
LOC111194189 NA coding downstream 126999 1626955 ~ 1638255 (+)
LOC103022771 NA coding downstream 184437 1684393 ~ 1692239 (+)
LOC103022156 NA coding downstream 223579 1723535 ~ 1735903 (+)
LOC111194259 NA coding downstream 240215 1740171 ~ 1746238 (+)
G137839 NA non-coding upstream 36070 1351274 ~ 1455746 (+)
G137850 NA non-coding upstream 51011 1440263 ~ 1440805 (+)
G137782 NA non-coding upstream 265299 1101388 ~ 1226517 (+)
G137754 NA non-coding upstream 479821 906454 ~ 1011995 (+)
LOC103021626 NA non-coding upstream 505662 980933 ~ 986154 (+)
G137856 NA non-coding downstream 8309 1508265 ~ 1509554 (+)
G137857 NA non-coding downstream 9697 1509653 ~ 1512939 (+)
G137858 dcaf8 non-coding downstream 16523 1516479 ~ 1517928 (+)
G137833 NA non-coding downstream 24756 1524712 ~ 1531923 (+)
G137837 NA non-coding downstream 32233 1532189 ~ 1537281 (+)
mrps14 mrps14 other upstream 451846 1037861 ~ 1039970 (+)
G137756 kiaa0040 other upstream 503178 980980 ~ 988638 (+)
rfwd2 rfwd2,LOC107658354 other upstream 710620 762715 ~ 781196 (+)
G137614 NA other upstream 1397243 93285 ~ 94573 (+)
LOC103042893 vps4b,LOC107727524,LOC107681797,LOC107710065 other downstream 335521 1835477 ~ 1851313 (+)
G137929 NA other downstream 522799 2022755 ~ 2024386 (+)
LOC103045052 cfap57,LOC106594647 other downstream 1400519 2900475 ~ 2936129 (+)
LOC103024858 NA other downstream 1582100 3082056 ~ 3084865 (+)
LOC103026108 selenot,selt1a,LOC107681817,LOC107708642 other downstream 1615464 3115420 ~ 3119488 (+)

Expression

G137826(LOC108430781,LOC108267757) Expression in all Baseline Samples

Bar chart with 16 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 150.
End of interactive chart.

G137826(LOC108430781,LOC108267757) Expression in each Bioproject

Bar chart with 7 bars.
G137826(LOC108430781,LOC108267757) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 600.
End of interactive chart.

Co-expression Network