G137827 (pfn2,pfn2l,LOC107681776)



Basic Information


Item Value
gene id G137827
gene name pfn2,pfn2l,LOC107681776
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information


Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 1762038 ~ 1770190 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence


>TU186493
aaacaatattttatatataaatactctTATGTTTTGCAGTTAatgaacaaaagaacaaaaaaatccatttatttCTGGTTGGAATAGATTTATTTGATCTGTCTGTAAACAAGGTGGTTAATTCATGGCATTTTTCCACGCAAATTTTTGAGTCGTATATATATCGGCTGGTCAAATAGAGTCAGGAGTATGAAAGAAGGGAGCGAAATGAACATGATTTCGTTGACATGTTTAACTTTAATCTGTACATATTCCACAAGCCCTGGAGAGTTTGAATTTACGCCAAATATCCCAAAGAAGGTGCCATTCAAGAATTGACTCCTTACAAGGCAGCAGTTTAAAATCCATCTCACAGTAGCAACAGATCAGATCTACATTATGGCACAGGATACacagcttttttttccttttttgattAAGTTTCCACAATACAACTGACTAGTGGTCTTTTTCCAACTATTACCACCATAACCCAGAAAAATTTAGTGtatacaggttttttttttttttttttttaaacttcagtGTCTTTTTCTCTTCGCCTATTTAATGAAGTAGTATTTGTACCGTGCTATGGACAGTTGATACATCGCAGTCGAATAAAGCACAAGGTAATGAATTCCAAATGACTTCGGTTCCTGAAATAAACGTTACGGATTAACAGAGTCAAAAGGGTGTTAAGGAAATTTTTGTAGTGAccaaaaacattaacaataagACTGCCATTTCATCTATTTCAAGACattcatgagaaaaaaaaaattaactaaaaaaaaaaaaaaaaaaaaaattcaggtaGTTTACCATTAGATCTTTGCTTCCCTCCCTAAGACATTTATCATTTATGCCATTAACAAGAGTGTATAATCACAAGGTTAGTGTAACATTGTGTGTCTGAAGTGTTGAATTTTTAGTGTTCTAAAGTCAGCAACAGATGAATATCTAGCAGTCATCCTTCAATAAATTGGTAGCAGTTCTGTTAATCCCCCAGgatgcaaaagaaaaataaaacaaacaaaaaccaaaaacataacattggtCCTATCAGAGGAAATAAAAGGACATAACCAGATAGTAGTTACAATGGGAGGgcagtgcttaaaaaaaaaaaaaagaagaaaaaaaaaatagagctgGCAAACAGTTTAAGTGGCTGAGCTATAGTAGCGGTGGAATGTCCTTGCACAAAGTCCAGGATGTAAATACTCCGGAGGAGCGATTTCATGgtttcgcttttttttttttcctttttttttaacccagaAATTGCAAATGCTGATCTGCCATCACACTcgaagagaggaaaagaaaataaatccaaCATTACACCAAGGACTTACAAGACCACATCCAAGTACAACAGCAAAAGCATCTTGATGtagggaattaaaaaaaaaaaataataataataataataataataaacaggtaAAGTGGTTAGGTTGTGGGAGGGATTAAAAAGGGTAGTGTtattatatagtaaataataatgtgAAGCCAGCGATTCAATTTCGGAATTCTGAACAATTCTGAACAAATTTGAACGATTTTGAACGATTCTGtgcagacaaagaaaaaaaataataaaaataataaatgtggaaagtgtTACGTGGGTAGTGTGAGGGTTCCTGTTAATAGTGTTCTTTCTAGTTGCCGGAGTCTGGCGCAGGGGATTTCGATTATAATGATGATATTTACGCTAAAAAAGATATGCATGCACTTTTTTCTCCCCCTTTCTTTCCTGGGCATGCTGTGTACACTAGGAAGACAAAAACAGCTCAGCAAGGCTCAAAGCACTTGAAGAGGCATCGATCTTAGAGGATGGACCACTTGGTGCCTCAGGAAAACTGGACAGTGAGTGACTTCATTATTCGGTGTTAAACCGAGCCAACGCGGCcgattaattttttaaatttcatattTAACCGATGCTCTGGCTTCAATGTTGacgtacagtactgtgtttttTAGCCTTCATAAAAAATGAACATGCTTGTGTTGCTGTGGCACTACAAGGGACAGGTAATATATGCTGAATAAACACAACAAAAGGGAGGGGGAAGGGTGTAGTGAACAGGAAATagggttaataaaaaaaataaagaacgaAATTAACACAAAGCATGAATTAGAATCAGGAATAGTGGGGAGGGTGGGACGGGACAGACAACGATGCATCCACTAACTGTATCTGGAAGTGCTGTCGAggtgacaaaaagaaaaataaccaatGGGAAAAGGGTGGTGGGGTGTGTTACAGTGagctgctgtgtgtggatggatgGGTTAAGGGCTGCTTCAGTATCCAACTTTCCTCAGGTACTCAGCCATGCTAAATGCTTTCTTGTTGAGCTGTCCTCCGTGGGTACCTTCCTTTCCCATGACTAAAACCAATACTTTGCCAGCTCTGCCTACGGAAACATTGTATGTTGGCTCCCCTCCTTGACTCTTCGTCCTGATGTCCATAGTCCAGTCCCCATCGATCTGCAGGCTGTCTCTGATCACAGAGCATTTCTTTTTCCCTAGGGTCAGCCCGTTGGTGAAGAAGGCCTCACGGTCTTTACCGACTATGACATCGATTTCGTCAGCCGTTATGCCGCTGAAAGTGCCACCCTCCGACGATGCCCACACGTATTTGGCGTCTGTGTAACCGACGATGGCGGAATCCTGGCAGCTGCCATCGGCCATCAGGTTATCCACGTAGCTCTGCCAAGACATGGTTCTTCTGTGCGGGATTTGGTTGTTTTGTTCACGACGCGAGGCTCCGAGCGAGGTTTAGAGGCTCAGCCGAACCACCAAAGTCGAGTGCCGGACTGAGGTTCCGTCTGTCTGTGGCGgctttagtgtgtttttttctctcctgtgggaagagaggggaagaaagagagagagagagggagagacgggCGGGCTGAGGCGGTAGCGCTTGGGTGTA
>TU186495
aaacaatattttatatataaatactctTATGTTTTGCAGTTAatgaacaaaagaacaaaaaaatccatttatttCTGGTTGGAATAGATTTATTTGATCTGTCTGTAAACAAGGTGGTTAATTCATGGCATTTTTCCACGCAAATTTTTGAGTCGTATATATATCGGCTGGTCAAATAGAGTCAGGAGTATGAAAGAAGGGAGCGAAATGAACATGATTTCGTTGACATGTTTAACTTTAATCTGTACATATTCCACAAGCCCTGGAGAGTTTGAATTTACGCCAAATATCCCAAAGAAGGTGCCATTCAAGAATTGACTCCTTACAAGGCAGCAGTTTAAAATCCATCTCACAGTAGCAACAGATCAGATCTACATTATGGCACAGGATACacagcttttttttccttttttgattAAGTTTCCACAATACAACTGACTAGTGGTCTTTTTCCAACTATTACCACCATAACCCAGAAAAATTTAGTGtatacaggttttttttttttttttttttaaacttcagtGTCTTTTTCTCTTCGCCTATTTAATGAAGTAGTATTTGTACCGTGCTATGGACAGTTGATACATCGCAGTCGAATAAAGCACAAGGTAATGAATTCCAAATGACTTCGGTTCCTGAAATAAACGTTACGGATTAACAGAGTCAAAAGGGTGTTAAGGAAATTTTTGTAGTGAccaaaaacattaacaataagACTGCCATTTCATCTATTTCAAGACattcatgagaaaaaaaaaaactaaaaaaaaaagaccccaGAGAAAGTCTGATTGACAAAACACAATGAAAGTTGAATGTTGAAGCTATAAATACtatttagaattattttaattctctATACTCGAAGAAACAAATCCTGttacattcttctttataatagTGATAGTTTATTATTGTTCCCAAAAGAACTGACGACATGCTAAGTGCTCAGAACAGCACGCAGTCATGTGATTCATCACAGTAACAATAAATCTGTCAAGTTTCCCACCCTAGGAGACAGTCgcaaaaaagacaaattaggCAGTTCAGTCTTTCAAACCATCTCAAGGGGTCTTTCCCTATTACGTATTAAAAAAGATTCAATTACGTtcttactctctttttttttttttttacatatgtaaAGTTTAAGTACGTTCATTtgcaaacagacaaaacagTGTTACCTTTGCCAGCTCTGCCTACGGAAACATTGTATGTTGGCTCCCCTCCTTGACTCTTCGTCCTGATGTCCATAGTCCAGTCCCCATCGATCTGCAGGCTGTCTCTGATCACAGAGCATTTCTTTTTCCCTAGGGTCAGCCCGTTGGTGAAGAAGGCCTCACGGTCTTTACCGACTATGACATCGATTTCGTCAGCCTATAATTAGGGAACGGCAAGAGTAGACAGCTCAGAACTCTGGTTGTTATGAGGCTCACCAAACTGTGTGTAACAAGTTACAAGTTAAGAGACGTATACAGAACTTCCACAGGCCTTCCTTATGAGCTCCTAATGGATCAgaacttaaatatttacatttacagcatgtgGCTGCTCATTTACAGACTCCCTTATCCGTAAGATTGACTTGCAGTAAATCTTACAGCATTCAAAGTTCTATTCATTGATGCATCAAGATTTGCTTGCCTGTAGAAGGGAAAGCAAACCATGACCACTAATAACTTCTCTTAATATAGCGTTTGGGCCTTGGTGAGTAAGGCCTGCAAAAGAGATTTCACAAAGCAGATTCTTCCTTAAACCTGATATATTTCAAGCTCAGCCAAAAGAAGAAGAGTTGACAGAATTGTCTACTGGACAGTTCTATTCCTAGAAATCAAATTACCTGGCTGTTT

Function


symbol description
pfn2 Enables ATP hydrolysis activity; actin monomer binding activity; and phosphatidylinositol-4,5-bisphosphate binding activity. Involved in several processes, including negative regulation of ruffle assembly; positive regulation of ATPase activity; and regulation of actin filament organization. Located in extracellular exosome.

NR:

description
profilin-2 isoform X1

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU186493 True 2938 lncRNA 0.40 3 1762038 1770190
TU186495 False 1856 lncRNA 0.36 2 1762038 1767436

Neighbor


gene id symbol gene type direction distance location
LOC111194259 NA coding upstream 15800 1740171 ~ 1746238 (+)
LOC103022156 NA coding upstream 26135 1723535 ~ 1735903 (+)
LOC103022771 NA coding upstream 69799 1684393 ~ 1692239 (+)
LOC111194189 NA coding upstream 123783 1626955 ~ 1638255 (+)
cdc73 cdc73 coding upstream 167962 1564930 ~ 1594076 (+)
tsc22d2 NA coding downstream 7035 1777225 ~ 1802319 (+)
LOC103043726 LOC103043726,LOC105899208 coding downstream 40535 1810725 ~ 1817212 (+)
kdsr kdsr,LOC106569188,LOC102792240 coding downstream 85107 1855297 ~ 1860515 (+)
LOC103042278 NA coding downstream 99284 1869474 ~ 1915019 (+)
dpp6 LOC108430761,LOC108267703 coding downstream 332031 2102221 ~ 2230065 (+)
G137880 NA non-coding upstream 41084 1720742 ~ 1720954 (+)
LOC111194188 NA non-coding upstream 125373 1633487 ~ 1636665 (+)
G137837 NA non-coding upstream 224757 1532189 ~ 1537281 (+)
G137833 NA non-coding upstream 230115 1524712 ~ 1531923 (+)
G137858 dcaf8 non-coding upstream 244110 1516479 ~ 1517928 (+)
G137890 NA non-coding downstream 34737 1804927 ~ 1806180 (+)
G137889 NA non-coding downstream 38015 1808205 ~ 1809612 (+)
G137898 NA non-coding downstream 108882 1879072 ~ 1879392 (+)
G137831 NA non-coding downstream 145957 1916147 ~ 1918411 (+)
G137902 NA non-coding downstream 151363 1921553 ~ 1924855 (+)
G137826 LOC108430781,LOC108267757 other upstream 262082 1491816 ~ 1499956 (+)
mrps14 mrps14 other upstream 722068 1037861 ~ 1039970 (+)
G137756 kiaa0040 other upstream 773400 980980 ~ 988638 (+)
rfwd2 rfwd2,LOC107658354 other upstream 980842 762715 ~ 781196 (+)
G137614 NA other upstream 1667465 93285 ~ 94573 (+)
LOC103042893 vps4b,LOC107727524,LOC107681797,LOC107710065 other downstream 65287 1835477 ~ 1851313 (+)
G137929 NA other downstream 252565 2022755 ~ 2024386 (+)
LOC103045052 cfap57,LOC106594647 other downstream 1130285 2900475 ~ 2936129 (+)
LOC103024858 NA other downstream 1311866 3082056 ~ 3084865 (+)
LOC103026108 selenot,selt1a,LOC107681817,LOC107708642 other downstream 1345230 3115420 ~ 3119488 (+)

Expression



Co-expression Network