G40767


Basic Information

Item Value
gene id G40767
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 360009 ~ 484185 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU46263
GTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATTTTTTTTTTTTTTTTTTTTTTTGGTTAGTAATTAATTTTATTGTCCATCTTTGTTAGCTATCCATCATCCATTTTCAGCTCTCCTTCTAATATTAGTTATCTCTCATCATCCAGTCTACAAATGTTCAATAAAAGGTTAGTTAAAAAAAAAAAATAACAAAAAAGTACAATTATTAAAGTGAAAGTTTTTTATAAAAGGTTTGCTGCAGTTGATCTACTAAAGTCTGTAATTATTACCAGTACAATATGAAACACAATACATTTTATTTTAGATTTTCACTATCGTTACAGCAAAATATCTGGCTACCTCAAACCAAGCTATGAATCTAAAGTAAATGTGAAAGTTCAGCTGTTAAAGTTAAAGACAAAGACACCAGAATATGATATTTATGAAATCTTCACTGCTCCTCTTCACTGGTTATCTGTCCCCACCAGAGGCTCATTCACCATTTTCTCAGCCGGAATTGAGGGCCCAACACTGAGCAGGACCTTCTTTCAGAGAATCTGGAATCTCGACGCCGTTCTTGTCCACACACCAGCAATAGTCAGTCTTATCCCAGCACTGCTGGGCCAGGTAGTTTCCATTCTCATCACACCTAGGGCGGAAGGATGGCAGATTGCTCACTTGGAGCTCTGATAAGTGGTCCATCGTTTCCGTCGGTCGACATTTCTTATCAATAGTCAGAAACTTTCCAAAATGTTGTCAATTTGCTTAAGGGATTTTTGTACCAGCTCTCTATTATGAAAATGTGAGAACTGAGAGTCCAGCGGTGGCACTCGGATGAAAGTGTCTAGAACAGACT
>TU46264
GTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATGGTTAGTAATTAATTTTATTGTCCATCTTTGTTAGCTATCCATCATCCATTTTCAGCTCTCCTTCTAATATTAGTTATCTCTCATCATCCAGTCTACAAATGTTCAATAAAAGGTTAGTTAAAAAAAAAAAATAACAAAAAAGTACAATTATTAAAGTGAAAGTTTTTTATAAAAGGTTTGCTGCAGTTGATCTACTAAAGTCTGTAATTATTACCAGTACAATATGAAACACAATACATTTTATTTTAGATTTTCACTATCGTTACAGCAAAATATCTGGCTACCTCAAACCAAGCTATGAATCTAAAGTAAATGTGAAAGTTCAGCTGTTAAAGTTAAAGACAAAGACACCAGAATATGATATTTATGAAATCTTCACTGCTCCTCTTCACTGGTTATCTGTCCCCACCAGAGGCTCATTCACCATTTTCTCAGGAATTGAGGGCCCAACACTGAGCAGGACCTTCTTTCAGAGAATCTGGAATCTCGACGCCGTTCTTGTCCACACACCAGCAATAGTCAGTCTTATCCCAGCACTGCTGGGCCAGGTAGTTTCCATTCTCATCACACCTAGGGCGGAAGGATGGCAGGAGGCTCTTGGCCTCCCCTGCAGCCTCCTTCTGGCACTGGGTGAGAACACTGGGCTCTGATGCATTTTCATGGGGGCGCTGGAACGCATGGCTGCACAAAAAAGGGAAGAAAGTCAGAATTATCATGTTTCCAATTGAGGACATTTATGGTAATGGGTTAAGGGTGATTTAAATAGTAGTATGATGAAAAGCCCATAAAATAAAAAGATGGAAAATGATGCAGCTCTCTGACCAAACTTGCGGCTGAGCTCATGCAGGCGGTCATTGCGTCTCTCTATGGTGTTGAGCTGATCCTTTTGGCTGTATGCCATGTAGGCGGTGAAGGCCTGACCTGCGATCAGTATTCCAGCCAGCAGAGTCACTCCTGCCACCTTCAGGGCCTGATTGTTAGATCCGTCCCTGAGGTCCCATATTGATGGAAGATTGCTCACTTGGAGCTCTGATAAGTGGTCCATCGTTTCCGTCGGTCGACATTTCTTATCAATAGTCAGAAACTTTCCAAAATGTTGTCAATTTGCTTAAGGGATTTTTGTACCAGCTCTCTATTATGAAAATGTGAGAACTGAGAGTCCAGCGGTGGCACTCGGATGAAAGTGTCTAGAACAGACT
>TU46267
GTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATTTTTTTTTTTTTTTTTTTTTTTGGTTAGTAATTAATTTTATTGTCCATCTTTGTTAGCTATCCATCATCCATTTTCAGCTCTCCTTCTAATATTAGTTATCTCTCATCATCCAGTCTACAAATGTTCAATAAAAGGTTAGTTAAAAAAAAAAAATAACAAAAAAGTACAATTATTAAAGTGAAAGTTTTTTATAAAAGGTTTGCTGCAGTTGATCTACTAAAGTCTGTAATTATTACCAGTACAATATGAAACACAATACATTTTATTTTAGATTTTCACTATCGTTACAGCAAAATATCTGGCTACCTCAAACCAAGCTATGAATCTAAAGTAAATGTGAAAGTTCAGCTGTTAAAGTTAAAGACAAAGACACCAGAATATGATATTTATGAAATCTTCACTGCTCCTCTTCACTGGTTATCTGTCCCCACCAGAGGCTCATTCACCATTTTCTCAGGAATTGAGGGCCCAACACTGAGCAGGACCTTCTTTCAGAGAATCTGGAATCTCGACGCCGTTCTTGTCCACACACCAGCAATAGTCAGTCTTATCCCAGCACTGCTGGGCCAGGTAGTTTCCATTCTCATCACACCTAGGGCGGAAGGATGGCAGGAGGCTCTTGGCCTCCCCTGCAGCCTCCTTCTGGCACTGGGTGAGAACACTGGGCTCTGATGCATTTTCATGGGGGCGCTGGAACGCATGGCTGCACAAAAAAGGGAAGAAAGTCAGAATTATCATGTTTCCAATTGAGGACATTTATGGTAATGGGTTAAGGGTGATTTAAATAGTAGTATGATGAAAAGCCCATAAAATAAAAAGATGGAAAATGATGCAGCTCTCTGACCAAACTTGCGGCTGAGCTCATGCAGGCGGTCATTGCGTCTCTCTATGGTGTTGAGCTGATCCTTTTGGCTGTATGCCATGTAGGCGGTGAAGGCCTGACCTGCGATCAGTATTCCAGCCAGCAGAGTCACTCCTGCCACCTTCAGGGCCTGATTGTTAGCGTCCCTGAGGTCCCATATTGATGGAAGATTGCTCACTTGGAGCTCTGATAAGTGGTCCATCGTTTCCGTCGGTCGACATTTCTTATCAATAGTCAGAAACTTTCCAAAATGTTGTCAATTTGCTTAAGGGATTTTTGTACCAGCTCTCTATTATGAAAATGTGAGAACTGAGAGTCCAGCGGTGGCACTCGGATGAAAGTGTCTAGAACAGACT
>TU46257
CTGAGTCAGAGAGGAGACTGAGATCGTGGGGGTCTCAGATGGAGCTCACTGAAGAGTTTGAGAGAGGTGTAAATCTCTTGCGCCCTTCAGTGGCTGATGAGAGTGTGCTCCTATATATATATAAATGCATAGTAAAATATATAAAACCTGTAGCTTGTAGTTTTGCCAATTTTTTTTTTTTTTTTTTTTTTATGGTTAGTAATTAATTTTATTGTCCATCTTTGTTAGCTATCCATCATCCATTTTCAGCTCTCCTTCTAATATTAGTTATCTCTCATCATCCAGTCTACAAATGTTCAATAAAAGGTTAGTTAAAAAAAAAAAATAACAAAAAAGTACAATTATTAAAGTGAAAGTTTTTTATAAAAGGTTTGCTGCAGTTGATCTACTAAAGTCTGTAATTATTACCAGTACAATATGAAACACAATACATTTTATTTTAGATTTTCACTATCGTTACAGCAAAATATCTGGCTACCTCAAACCAAGCTATGAATCTAAAGTAAATGTGAAAGTTCAGCTGTTAAAGTTAAAGACAAAGACACCAGAATATGATATTTATGAAATCTTCACTGCTCCTCTTCACTGGTTATCTGTCCCCACCAGAGGCTCATTCACCATTTTCTCAGCTAAAATAAAGAACAGGGATGCATGCTTTTTATTGGAGTTACATATCATATGACACCA
>TU46261
TCATGGAAATTCACATCATAGCCTTTACCATACAACCTGAAAGTACAAGAAATTGTCTAAAAAAAAAAACAGAACACACAAATGGTTAGTAATTAATTTTATTGTCCATCTTTGTTAGCTATCCATCATCCATTTTCAGCTCTCCTTCTAATATTAGTTATCTCTCATCATCCAGTCTACAAATGTTCAATAAAAGGTTAGTTAAAAAAAAAAAATAACAAAAAAGTACAATTATTAAAGTGAAAGTTTTTTATAAAAGGTTTGCTGCAGTTGATCTACTAAAGTCTGTAATTATTACCAGTACAATATGAAACACAATACATTTTATTTTAGATTTTCACTATCGTTACAGCAAAATATCTGGCTACCTCAAACCAAGCTATGAATCTAAAGTAAATGTGAAAGTTCAGCTGTTAAAGTTAAAGACAAAGACACCAGAATATGATATTTATGAAATCTTCACTGCTCCTCTTCACTGGTTATCTGTCCCCACCAGAGGCTCATTCACCATTTTCTCAGCGAATTGAGGGCCCAACACTGAGCAGGACCTTCTTTCAGAGAATCTGGAATCTCGACGCCGTTCTTGTCCACACACCAGCAATAGTCAGTCTTATCCCAGCACTGCTGGGCCAGGTAGTTTCCATTCTCATCACACCTAGGGCGGAAGGATGGCAGGAGGCTCTTGGCCTCCCCTGCAGCCTCCTTCTGGCACTGGGTGAGAACACTGGGCTCTGTGGGACAGAAATCAACAGAAAATACATCTGTGTTAGAGCAAAGACATACAATTGCTGAGAACTACATTTGGTGTTTGACAATGACAAGATCTTCATACCTGGTTTGGGAGATGAGGAAGGGGAATCCTGAAAAATAGAGCATGATGACAGGCATGAGAGAACTGTATTTATATATTGTATGTTTTTATTTATGATTTTATATTTTAATTTATCATTTCCTGTTTTTACACTACCGGTCAAAAGGATAATTAAGATTTTAAAATGTTTTTTTTTTTTAAAAGTCTCAGATTCTTTCCAAAGCTGCATTTATTTATTTGATCAAAAATACAGTAAAAACAGTCATGTGAAATTTGGAAGAACTTTTCAATTTAATAATAAATAATTTTAATATGAATAAAATTAAAATGAATCATTACTCCAGTCTTCAGTGTCACATGATCCTTCAATCATTCTAATATGCTGATTTGCTGCTTATTTATTGTCAATTATTATTGGTGCTCAGTTATTAATAATGGTTCTTTTTGGTTATTGATAATGGTTCCTCTTTTTTCAGGATTATTTGATGAAAAGAAATTAAAAAAACAATAGAGTTTATTTGAAATAAAAATCTTTTGTAATATATATAATGTCTTTTCTGTCTCTTGCTCAATTCAATGTGTTGTTGTTGAATAAAAGTATTAATTTCTTATTTTTTTTTACATTTTTATTCTTAATTAATTTTATATTGCTTAGGCTACCCCAAAATTTTGAATGACAGTGTATCACAGTTTCCAAAATAAATAAATAAATAAACAGCAAAAATGGTTTTGAACATTGATAACTATTATTAATAATTGAGTAACAATAAAAATTGATAATAACTGAGCAGCAAATCAGCATATTAGAATGATTTCTGAAGAATCATGTGACACTGAAGACTGGAGTAATGATGCTGAAAATTCAGCTTTGCATCACAGGAATAAATTACATTTTAACATAGGCCTATATTAAAATAAAAAATTAAATTGTAATAATATTTCACTATATTACAGTTTTACTGTATTTTTGATCAAATAAATGCAGTATTGGTGAGAATAAGAGACTTTATCAAAAACATTAAAAATGATTAATTAATTATTTTAAACTTTTGACCGATAGTGTTTATTCATAATTTCAGCAAAACCATCTGAGAAACGCAGCTTCAACTTTCTGACTCAATTCCGACACCATGCGGCCGCCTGACTCATTACAACACGAGAGGAAGTGAGTTTTACCTTCTTCTCTTTGGGCTCTTCCTCAAGCGTCAGAGCAAGGGAGCTCATAGGAAGATGCATTTTCATGGGGGCGCTGGAACGCATGGCAACTTGCGGCTGAGCTCATGCAGGCGGTCATTGCGTCTCTCTATGGTGTTGAGCTGATCCTTTTGGCTGTATGCCATGTAGGCGGTGAAGGCCTGACCTGCGATCAGTATTCCAGCCAGCAGAGTCACTCCTGCCACCTTCAGGGCCTGATTGTTAGATCTGTTAGGAAACATAGACCAGTGTATTCAAGCACTTCATCTTGAAAGCATCTGCTGATTACAAACATCTGACAGACGTCT
>TU46258
TGACTCAATTCCGACACCATGCGGCCGCCTGACTCATTACAACACGAGAGGAAGTGAGTTTTACCTTCTTCTCTTTGGGCTCTTCCTCAAGCGTCAGAGCAAGGGAGCTCATAGGAAGATGCATTTTCATGGGGGCGCTGGAACGCATGGCTGCACAAAAAAGGGAAGAAAGTCAGAATTATCATGTTTCCAATTGAGGACATTTATGGTAATGGGTTAAGGGTGATTTAAATAGTAGTATGATGAAAAGCCCATAAAATAAAAAGATGGAAAATGATGCAGCTCTCTGACCAAACTTGCGGCTGAGCTCATGCAGGCGGTCATTGCGTCTCTCTATGGTGTTGAGCTGATCCTTTTGGCTGTATGCCATGTAGGCGGTGAAGGCCTGACCTGCGATCAGTATTCCAGCCAGCAGAGTCACTCCTGCCACCTTCAGGGCCTGATTGTTAGATCTGAGGTCCCATATTGATGGAAGATTGCTCACTTGGAGCTCTGATAAGTGGTCCATCGTTTCCGTCGGTCGACATTTCTTATCAATAGTCAGAAACTTTCCAAAATGTTGTCAATTTGCTTAAGGGATTTTTGTACCAGCTCTCTATTATGAAAATGTGAGAACTGAGAGTCCAGCGGTGGCACTCGGATGAAAGTGTCTAGAACAGACT
>TU46265
TGACTCAATTCCGACACCATGCGGCCGCCTGACTCATTACAACACGAGAGGAAGTGAGTTTTACCTTCTTCTCTTTGGGCTCTTCCTCAAGCGTCAGAGCAAGGGAGCTCATAGGAAGATGCATTTTCATGGGGGCGCTGGAACGCATGGCCAAACTTGCGGCTGAGCTCATGCAGGCGGTCATTGCGTCTCTCTATGGTGTTGAGCTGATCCTTTTGGCTGTATGCCATGTAGGCGGTGAAGGCCTGACCTGCGATCAGTATTCCAGCCAGCAGAGTCACTCCTGCCACCTTCAGGGCCTGATTGTTAGATGTCCCTGAGGTCCCATATTGATGGAAGATTGCTCACTTGGAGCTCTGATAAGTGGTCCATCGTTTCCGTCGGTCGACATTTCTTATCAATAGTCAGAAACTTTCCAAAATGTTGTCAATTTGCTTAAGGGATTTTTGTACCAGCTCTCTATTATGAAAATGTGAGAACTGAGAGTCCAGCGGTGGCACTCGGATGAAAGTGTCTAGAACAGACT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU46263 False 843 lncRNA 0.36 6 360009 484185
TU46264 False 1240 lncRNA 0.48 6 360009 484185
TU46267 False 1259 lncRNA 0.40 7 360009 484185
TU46257 False 687 lncRNA 0.42 2 454533 481208
TU46261 False 2313 TUCP 0.34 3 480632 483335
TU46258 False 662 lncRNA 0.46 2 482804 484185
TU46265 True 526 lncRNA 0.47 3 482804 484185

Neighbor

gene id symbol gene type direction distance location
CI01000006_00315992_00319208 NA coding upstream 40623 315062 ~ 319386 (+)
CI01000006_00297085_00312816 CORO6 coding upstream 46954 297085 ~ 313055 (+)
CI01000006_00278488_00290221 SSH2B coding upstream 68305 278488 ~ 291704 (+)
CI01000006_00158417_00184263 OR115-7, OR115-2, OR115-9 coding upstream 175673 158357 ~ 184336 (+)
CI01000006_00143205_00144149 NA coding upstream 215467 142765 ~ 144542 (+)
CI01000006_00502041_00503898 NA coding downstream 17856 502041 ~ 504306 (+)
CI01000006_00537552_00548276 NA coding downstream 53267 537452 ~ 548591 (+)
CI01000006_00586425_00608567 NA coding downstream 101783 585968 ~ 609091 (+)
CI01000006_00612891_00618198 RBM22.S, RBM22 coding downstream 127802 611987 ~ 618372 (+)
CI01000006_00647015_00654423 NA coding downstream 162830 647015 ~ 655017 (+)
G40811 NA non-coding upstream 6046 353720 ~ 353963 (+)
G40800 NA non-coding upstream 54743 305007 ~ 305266 (+)
G40799 NA non-coding upstream 56782 303015 ~ 303227 (+)
G40797 NA non-coding upstream 60817 298960 ~ 299192 (+)
G40796 NA non-coding upstream 61283 298411 ~ 298726 (+)
G40768 NA non-coding downstream 4222 488407 ~ 493026 (+)
G40852 NA non-coding downstream 44943 529128 ~ 551356 (+)
G40904 NA non-coding downstream 142548 626733 ~ 630432 (+)
CI01000006_00666971_00667988 NA non-coding downstream 173517 666793 ~ 668405 (+)
G40935 NA non-coding downstream 230719 714904 ~ 715650 (+)
G41170 NA other downstream 1207880 1692065 ~ 1695821 (+)
G41424 NA other downstream 2161477 2645662 ~ 2660570 (+)
G41591 NA other downstream 2351982 2836167 ~ 2839421 (+)
CI01000006_03734862_03735227 BANF1, BANF1.S, BANF1.L other downstream 3245045 3734554 ~ 3736035 (+)
CI01000006_00423835_00428157 NA coding upstream 52263 423093 ~ 428369 (+)
CI01000006_00418370_00420217 SPAG16 coding upstream 60315 418370 ~ 420317 (+)
CI01000006_00363989_00372189 NA coding upstream 108368 363989 ~ 372264 (+)
G40772 NA other upstream 1438 475465 ~ 479194 (+)

Expression


Co-expression Network