G137856


Basic Information

Item Value
gene id G137856
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 1508265 ~ 1509554 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU186527
cttttctctttttttactgcACAAGTTGTACATGTTTTCAACTGAACTGATAAACACAACATTAGGCAGCGGTGGGATAACTCATCAATCAGAAcctagaaagaaaaaaacagagaaaaacatacatataaatgcatttaagcACCTGTGAGGTGAGAGGATCTGGATTTCAGTCTGATTGAACAGTcatggaaaacaaaacaaaaaaatctaaacaaaaagcAGTGCAGAATTCCAGATGATATATATTGCGGGGTTTCAGTGACTTGAAGGGGAGGAAAAGATGAGTTCTTATGCCTGCATTGTTTTCCACCAATGTTTAAAAGTAGTTTTCTTATACAATATAAATCTCTGCATTGATACCAATTGAGTTCTGACATCTTTCCTGAAAGAACAATGGctgaacattattattattttttttacagttaatttgttatatatatatatatttatatatttgtatgtacaTACAAAgtaatttaacttattttatttttttctcatacaaaaagagaaaagctgGACTTTATTCTCCTCAttaaaaagaagaaggaaaaaagggTGATGAGTCTAACCCCCGGCCCTCCCTACCTGACAATACTACCACCGCAGACGCCGCCGCTACCGTCGCTGCCCTTTGGAACGCATGCAAATCAGAAAAAGTGTCCCAAAAACCCGTCCTGCTTAGTTCTAATCCCACGAACACAAGAGCCACTTCATAAAACAGACGCCATTAAAGAGCACATTCTCGAACATTAAAGGATGACTCCTGCAcgtgtttattattatctattCTCCATCTGCTGCATATCTAGCCTACGATTGATTATCGATTATATTATCCATCGATTATATTAAACGACAACACCAGCATGCTTCTCCGTCCTCAGAAAACCTGAACAAAACCAAGCGAttgaagaaaaaggaaaaaaaaagacccaCAAACTTATAATAGAAGCCAAGAGGTAGATACTTCATCGTCTTCAGCAAACGTCAATTGGCTTCTACAATAAGTGCACTCCTTTACTAACTTTAAATGGGAAGTACTGGGAAATTATCCTCTGTGTGGAAAAAATCGTATGCAGCCAAATGGAGCAAATGGAGAACAGACTGGAAAACACTGGAAAACGTCttcctttaaaggagaactttgatgtaaaatgtactaacctttgttgaatagctctcctccgctctcctgcagctttctgagatcaaGAACTTTGCTCAAACAGGCTTTAAGAAAGGAGATAATGCAGATAAatctctttttaca
>TU186528
TGAGAATcagccttttctctttttttactgcACAAGTTGTACATGTTTTCAACTGAACTGATAAACACAACATTAGGCAGCGGTGGGATAACTCATCAATCAGAAcctagaaagaaaaaaacagagaaaaacatacatataaatgcatttaagcACCTGTGAGGTGAGAGGATCTGGATTTCAGTCTGATTGAACAGTcatggaaaacaaaacaaaaaaatctaaacaaaaagcAGTGCAGAATTCCAGATGATATATATTGCGGGGTTTCAGTGACTTGAAGGGGAGGAAAAGATGAGTTCTTATGCCTGCATTGTTTTCCACCAATGTTTAAAAGTAGTTTTCTTATACAATATAAATCTCTGCATTGATACCAATTGAGTTCTGACATCTTTCCTGAAAGAACAATGGctgaacattattattattttttttacagttaatttgttatatatatatatatttatatatttgtatgtacaTACAAAgtaatttaacttattttatttttttctcatacaaaaagagaaaagctgGACTTTATTCTCCTCAttaaaaagaagaaggaaaaaagggTGATGAGTCTAACCCCCGGCCCTCCCTACCTGACAATACTACCACCGCAGACGCCGCCGCTACCGTCGCTGCCCTTTGGAACGCATGCAAATCAGAAAAAGTGTCCCAAAAACCCGTCCTGCTTAGTTCTAATCCCACGAACACAAGAGCCACTTCATAAAACAGACGCCATTAAAGAGCACATTCTCGAACATTAAAGGATGACTCCTGCAcgtgtttattattatctattCTCCATCTGCTGCATATCTAGCCTACGATTGATTATCGATTATATTATCCATCGATTATATTAAACGACAACACCAGCATGCTTCTCCGTCCTCAGAAAACCTGAACAAAACCAAGCGAttgaagaaaaaggaaaaaaaaagacccaCAAACTTATAATAGAAGCCAAGAGGTAGATACTTCATCGTCTTCAGCAAACGTCAATTGGCTTCTACAATAAGTGCACTCCTTTACTAACTTTAAATGGGAAGTACTGGGAAATTATCCTCTGTGTGGAAAAAATCGTATGCAGCCAAATGGAGCAAATGGAGAACAGACTGGAAAACACTGGAAAACGTCttcctttaaaggagaactttgatgtaaaatgtactaacctttgttgaatagctctcctccgctctcctgcagc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU186527 True 1279 lncRNA 0.37 1 1508276 1509554
TU186528 False 1219 lncRNA 0.37 1 1508265 1509483

Neighbor

gene id symbol gene type direction distance location
LOC111194186 NA coding upstream 16925 1489305 ~ 1491340 (+)
rnf32 NA coding upstream 59238 1436940 ~ 1449027 (+)
rbm33 rbm33 coding upstream 173072 1300585 ~ 1335193 (+)
LOC103046777 NA coding upstream 262496 1241235 ~ 1245769 (+)
insig1 LOC108412812 coding upstream 284436 1217510 ~ 1223829 (+)
cdc73 cdc73 coding downstream 55376 1564930 ~ 1594076 (+)
LOC111194189 NA coding downstream 117401 1626955 ~ 1638255 (+)
LOC103022771 NA coding downstream 174839 1684393 ~ 1692239 (+)
LOC103022156 NA coding downstream 213981 1723535 ~ 1735903 (+)
LOC111194259 NA coding downstream 230617 1740171 ~ 1746238 (+)
G137839 NA non-coding upstream 52519 1351274 ~ 1455746 (+)
G137850 NA non-coding upstream 67460 1440263 ~ 1440805 (+)
G137782 NA non-coding upstream 281748 1101388 ~ 1226517 (+)
G137754 NA non-coding upstream 496270 906454 ~ 1011995 (+)
LOC103021626 NA non-coding upstream 522111 980933 ~ 986154 (+)
G137857 NA non-coding downstream 99 1509653 ~ 1512939 (+)
G137858 dcaf8 non-coding downstream 6925 1516479 ~ 1517928 (+)
G137833 NA non-coding downstream 15158 1524712 ~ 1531923 (+)
G137837 NA non-coding downstream 22635 1532189 ~ 1537281 (+)
LOC111194188 NA non-coding downstream 123933 1633487 ~ 1636665 (+)
G137826 LOC108430781,LOC108267757 other upstream 8309 1491816 ~ 1499956 (+)
mrps14 mrps14 other upstream 468295 1037861 ~ 1039970 (+)
G137756 kiaa0040 other upstream 519627 980980 ~ 988638 (+)
rfwd2 rfwd2,LOC107658354 other upstream 727069 762715 ~ 781196 (+)
G137614 NA other upstream 1413692 93285 ~ 94573 (+)
LOC103042893 vps4b,LOC107727524,LOC107681797,LOC107710065 other downstream 325923 1835477 ~ 1851313 (+)
G137929 NA other downstream 513201 2022755 ~ 2024386 (+)
LOC103045052 cfap57,LOC106594647 other downstream 1390921 2900475 ~ 2936129 (+)
LOC103024858 NA other downstream 1572502 3082056 ~ 3084865 (+)
LOC103026108 selenot,selt1a,LOC107681817,LOC107708642 other downstream 1605866 3115420 ~ 3119488 (+)

Expression


Co-expression Network