G137858 (dcaf8)


Basic Information

Item Value
gene id G137858
gene name dcaf8
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 1516479 ~ 1517928 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU186536
TGTAACTGGCCAGCAgctCTGAGCCGTCGTGGCTGTAGACTAAGCAGGTGATGTTAGTCTTGGACTCGCTGGACACCAGGTGTGATGGACAGAATTTCTTCAGAACGCCGTTATTGTCGTTTTCATTGATCTTTCTCTGGTCATAGATCCTAATGTACTGATCTCTTCCACCAACAGCAAAGTGATGTGTGTTCGCTGGATTCACAAAGATTGTGTACAAGCCCACCTTCTTATCACCCTC

Function

symbol description
dcaf8 Acts upstream of or within glial cell development and retina development in camera-type eye. Predicted to be part of Cul4-RING E3 ubiquitin ligase complex. Predicted to be active in cytoplasm. Human ortholog(s) of this gene implicated in giant axonal neuropathy 2. Orthologous to human DCAF8 (DDB1 and CUL4 associated factor 8).

NR:

description
PREDICTED: DDB1- and CUL4-associated factor 8

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU186536 True 241 lncRNA 0.47 3 1516479 1517928

Neighbor

gene id symbol gene type direction distance location
LOC111194186 NA coding upstream 25139 1489305 ~ 1491340 (+)
rnf32 NA coding upstream 67452 1436940 ~ 1449027 (+)
rbm33 rbm33 coding upstream 181286 1300585 ~ 1335193 (+)
LOC103046777 NA coding upstream 270710 1241235 ~ 1245769 (+)
insig1 LOC108412812 coding upstream 292650 1217510 ~ 1223829 (+)
cdc73 cdc73 coding downstream 47002 1564930 ~ 1594076 (+)
LOC111194189 NA coding downstream 109027 1626955 ~ 1638255 (+)
LOC103022771 NA coding downstream 166465 1684393 ~ 1692239 (+)
LOC103022156 NA coding downstream 205607 1723535 ~ 1735903 (+)
LOC111194259 NA coding downstream 222243 1740171 ~ 1746238 (+)
G137857 NA non-coding upstream 3540 1509653 ~ 1512939 (+)
G137856 NA non-coding upstream 6925 1508265 ~ 1509554 (+)
G137839 NA non-coding upstream 60733 1351274 ~ 1455746 (+)
G137850 NA non-coding upstream 75674 1440263 ~ 1440805 (+)
G137782 NA non-coding upstream 289962 1101388 ~ 1226517 (+)
G137833 NA non-coding downstream 6784 1524712 ~ 1531923 (+)
G137837 NA non-coding downstream 14261 1532189 ~ 1537281 (+)
LOC111194188 NA non-coding downstream 115559 1633487 ~ 1636665 (+)
G137880 NA non-coding downstream 202814 1720742 ~ 1720954 (+)
G137827 pfn2,pfn2l,LOC107681776 non-coding downstream 244110 1762038 ~ 1770190 (+)
G137826 LOC108430781,LOC108267757 other upstream 16523 1491816 ~ 1499956 (+)
mrps14 mrps14 other upstream 476509 1037861 ~ 1039970 (+)
G137756 kiaa0040 other upstream 527841 980980 ~ 988638 (+)
rfwd2 rfwd2,LOC107658354 other upstream 735283 762715 ~ 781196 (+)
G137614 NA other upstream 1421906 93285 ~ 94573 (+)
LOC103042893 vps4b,LOC107727524,LOC107681797,LOC107710065 other downstream 317549 1835477 ~ 1851313 (+)
G137929 NA other downstream 504827 2022755 ~ 2024386 (+)
LOC103045052 cfap57,LOC106594647 other downstream 1382547 2900475 ~ 2936129 (+)
LOC103024858 NA other downstream 1564128 3082056 ~ 3084865 (+)
LOC103026108 selenot,selt1a,LOC107681817,LOC107708642 other downstream 1597492 3115420 ~ 3119488 (+)

Expression


Co-expression Network