G137890



Basic Information


Item Value
gene id G137890
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information


Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 1804927 ~ 1806180 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence


>TU186572
ccaaaaTTCTCTTTTCAACAAAGCACCCGTCTCTTCTTCATCGACCCCGAGCAGCTCCCCTcttcataaaaaacaaaactaaactttaTCATCTGATCTAACTGATGTAAAAGTTGCTCAGGGAACACAAAATATAACCCAAACACAGGAACACTGGCTTTGAGAAAAGAAGGAACTGCAGCCAAATACAAACATGAAAAGGCTCAAAAACATTGTTGAATCAGAGCGTCAGGGCCTCCTGGTTTCAAAGCATCTCTTCAGCCCAGGAAATTAAACACAACATCGCTCATAAACAGCGCTCCATTAGCCGGTCCGGAGCGCTGGAGCTAACGTGgccgctctgtctctctgtctgggCGGGGTTTGGGTCAGTTTACTGCTCTGAGATTGGGTCAAAAGAAACATGTGACCTCAGTAAGTCTCTCTTATTGGTCCGTAGGGCTCGTAGTTAGCCAACAGTGACGAATCGTCCTCCTTTGCTGCTGTGCTTCGATGCTGCGATGCGTTTGTCCTTCAGAATCCGGAATCGCTCGTTCAGTGTCATCGTggtTGTTTTCCCACACTGTTGATGTCAAACTGTAAAGCAACTCCTTTAGGTGGTTTTCTCTCAGGCTCCTCTGCAGGGGTAGGGGGAGGGGCTGGGGTAGAGGGGTGGAGAGACCACGAGTGGGCCGGCCTAtcacaaaaaacatatatttgtacTCAGCAAAAATCATAAACATGCAGTTTCAGCACTCGTTGCTCATAATCCCGCCGTCCTACAACATTTCAGAGTGCGTTTTTAGGCTACCGGagcattttctttctatttttttgtctcAGCTATTGTTGcaaatcaattaaaattaatttaaaactgtATAGAAAAGTGAAAAC

Function


GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU186572 True 876 lncRNA 0.45 2 1804927 1806180

Neighbor


gene id symbol gene type direction distance location
tsc22d2 NA coding upstream 2608 1777225 ~ 1802319 (+)
LOC111194259 NA coding upstream 58689 1740171 ~ 1746238 (+)
LOC103022156 NA coding upstream 69024 1723535 ~ 1735903 (+)
LOC103022771 NA coding upstream 112688 1684393 ~ 1692239 (+)
LOC111194189 NA coding upstream 166672 1626955 ~ 1638255 (+)
LOC103043726 LOC103043726,LOC105899208 coding downstream 4545 1810725 ~ 1817212 (+)
kdsr kdsr,LOC106569188,LOC102792240 coding downstream 49117 1855297 ~ 1860515 (+)
LOC103042278 NA coding downstream 63294 1869474 ~ 1915019 (+)
dpp6 LOC108430761,LOC108267703 coding downstream 296041 2102221 ~ 2230065 (+)
LOC103042593 LOC108430758 coding downstream 515858 2322038 ~ 2362870 (+)
G137827 pfn2,pfn2l,LOC107681776 non-coding upstream 34737 1762038 ~ 1770190 (+)
G137880 NA non-coding upstream 83973 1720742 ~ 1720954 (+)
LOC111194188 NA non-coding upstream 168262 1633487 ~ 1636665 (+)
G137837 NA non-coding upstream 267646 1532189 ~ 1537281 (+)
G137833 NA non-coding upstream 273004 1524712 ~ 1531923 (+)
G137889 NA non-coding downstream 2025 1808205 ~ 1809612 (+)
G137898 NA non-coding downstream 72892 1879072 ~ 1879392 (+)
G137831 NA non-coding downstream 109967 1916147 ~ 1918411 (+)
G137902 NA non-coding downstream 115373 1921553 ~ 1924855 (+)
G137917 LOC108430762,LOC108267465 non-coding downstream 181634 1987814 ~ 1988466 (+)
G137826 LOC108430781,LOC108267757 other upstream 304971 1491816 ~ 1499956 (+)
mrps14 mrps14 other upstream 764957 1037861 ~ 1039970 (+)
G137756 kiaa0040 other upstream 816289 980980 ~ 988638 (+)
rfwd2 rfwd2,LOC107658354 other upstream 1023731 762715 ~ 781196 (+)
G137614 NA other upstream 1710354 93285 ~ 94573 (+)
LOC103042893 vps4b,LOC107727524,LOC107681797,LOC107710065 other downstream 29297 1835477 ~ 1851313 (+)
G137929 NA other downstream 216575 2022755 ~ 2024386 (+)
LOC103045052 cfap57,LOC106594647 other downstream 1094295 2900475 ~ 2936129 (+)
LOC103024858 NA other downstream 1275876 3082056 ~ 3084865 (+)
LOC103026108 selenot,selt1a,LOC107681817,LOC107708642 other downstream 1309240 3115420 ~ 3119488 (+)

Expression



Co-expression Network