Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC103042893 |
| gene name | vps4b,LOC107727524,LOC107681797,LOC107710065 |
| gene type | misc |
| species | mexican tetra (Astyanax mexicanus) |
| category of species | ornamental fish |
| Item | Value |
|---|---|
| chromosome id | NC_035912.1 |
| NCBI id | CM008315.1 |
| chromosome length | 41032606 |
| location | 1835477 ~ 1851313 (+) |
| genome version | Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome |
| symbol | description |
|---|---|
| vps4b | Predicted to enable ATP hydrolysis activity and microtubule-severing ATPase activity. Acts upstream of or within odontogenesis. Predicted to be located in late endosome membrane. Predicted to be active in nucleus. Is expressed in ceratobranchial 5 primary tooth; pharyngeal arch 3-7; and pharyngeal pouch. Orthologous to human VPS4B (vacuolar protein sorting 4 homolog B). |
| description |
|---|
| PREDICTED: vacuolar protein sorting-associated protein 4B isoform X1 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU186579 | False | 565 | TUCP | 0.47 | 3 | 1835477 | 1838517 |
| XM_022677685.1 | True | 2030 | mRNA | 0.50 | 14 | 1835502 | 1851313 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC103043726 | LOC103043726,LOC105899208 | coding | upstream | 18265 | 1810725 ~ 1817212 (+) |
| tsc22d2 | NA | coding | upstream | 33158 | 1777225 ~ 1802319 (+) |
| LOC111194259 | NA | coding | upstream | 89239 | 1740171 ~ 1746238 (+) |
| LOC103022156 | NA | coding | upstream | 99574 | 1723535 ~ 1735903 (+) |
| LOC103022771 | NA | coding | upstream | 143238 | 1684393 ~ 1692239 (+) |
| kdsr | kdsr,LOC106569188,LOC102792240 | coding | downstream | 3984 | 1855297 ~ 1860515 (+) |
| LOC103042278 | NA | coding | downstream | 18161 | 1869474 ~ 1915019 (+) |
| dpp6 | LOC108430761,LOC108267703 | coding | downstream | 250908 | 2102221 ~ 2230065 (+) |
| LOC103042593 | LOC108430758 | coding | downstream | 470725 | 2322038 ~ 2362870 (+) |
| LOC103040438 | pcyt1a,LOC103040438,LOC108430756,LOC108267677,LOC107709348,LOC107671662,LOC107727528 | coding | downstream | 544644 | 2395957 ~ 2405369 (+) |
| G137889 | NA | non-coding | upstream | 25865 | 1808205 ~ 1809612 (+) |
| G137890 | NA | non-coding | upstream | 29297 | 1804927 ~ 1806180 (+) |
| G137827 | pfn2,pfn2l,LOC107681776 | non-coding | upstream | 65287 | 1762038 ~ 1770190 (+) |
| G137880 | NA | non-coding | upstream | 114523 | 1720742 ~ 1720954 (+) |
| LOC111194188 | NA | non-coding | upstream | 198812 | 1633487 ~ 1636665 (+) |
| G137898 | NA | non-coding | downstream | 27759 | 1879072 ~ 1879392 (+) |
| G137831 | NA | non-coding | downstream | 64834 | 1916147 ~ 1918411 (+) |
| G137902 | NA | non-coding | downstream | 70240 | 1921553 ~ 1924855 (+) |
| G137917 | LOC108430762,LOC108267465 | non-coding | downstream | 136501 | 1987814 ~ 1988466 (+) |
| G137930 | NA | non-coding | downstream | 173880 | 2025193 ~ 2028808 (+) |
| G137826 | LOC108430781,LOC108267757 | other | upstream | 335521 | 1491816 ~ 1499956 (+) |
| mrps14 | mrps14 | other | upstream | 795507 | 1037861 ~ 1039970 (+) |
| G137756 | kiaa0040 | other | upstream | 846839 | 980980 ~ 988638 (+) |
| rfwd2 | rfwd2,LOC107658354 | other | upstream | 1054281 | 762715 ~ 781196 (+) |
| G137614 | NA | other | upstream | 1740904 | 93285 ~ 94573 (+) |
| G137929 | NA | other | downstream | 171442 | 2022755 ~ 2024386 (+) |
| LOC103045052 | cfap57,LOC106594647 | other | downstream | 1049162 | 2900475 ~ 2936129 (+) |
| LOC103024858 | NA | other | downstream | 1230743 | 3082056 ~ 3084865 (+) |
| LOC103026108 | selenot,selt1a,LOC107681817,LOC107708642 | other | downstream | 1264107 | 3115420 ~ 3119488 (+) |
| LOC103047488 | pls1,LOC108437523,LOC107722705,LOC107656864,LOC107565818,LOC107599860,LOC107709028,LOC107681752 | other | downstream | 1950540 | 3801853 ~ 3839372 (+) |
