G137943 (LOC108430760)


Basic Information

Item Value
gene id G137943
gene name LOC108430760
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 2207367 ~ 2237690 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU186635
tttacaccaggagtaaagcagcataaagttatccaaaagcagtgtgtaagactggtggaggaggagaacatgatgccaagatgcatgaaaaaaaactgattaaaaactagccagggttattccaccaaatattgattttttgcattattttgagattttgtcttttcagccatttctcattttctgcaaatacatgctctaaatctaaatgacaatatttttatttgtaatttgggagaaattttgtctgtattttaaagaataaaagaacaatgttcattttactcaagtgctctctttattatatccagagctttttttatgtttgtttgttttatgttgaaactgattttaaaattgaTCCATTTTTGCAGTCATGAGCTTCGGCAAAGCGTCTGGCTTCTGCCATGCACTCTCActggttttaaaaatgaaaaaatgaacacaaaccCACGATACGGCACAGGAAGCAGTCCGAAATCAGgcccagagaaaaaaaaaaagaagtaaaaacaaGCAGGAGGGTGGAAACCGTTTCAAGTACAAGAGAGGATTGAGGAGCTCTATGtacagttaaaataaaagaCGCGAAAGCAcactgcttcttcttcttcttttcttttcttttataagTCTTACAGCAAGCAGATAAAATACATTCTTCATTTTGGTTGCAGAAGGACCAATCAATTTTTCAtatttccattcattcattcatttgatAATTCGTTCACAATTGAGAAGACCTCCTTTTCTACACTTGCAACAAAAAGTATTTCtagtaatacttaaaaaaaaagacactaaaAAACCTCTCGTCTCGTCTCATCGACATCCGATTCAATCCTACTACGACCCTATGACCTACTTCCGAGAACATTCGCCGCCATTCTGGCTCGAAATtatgctctttttttatttacgcATTTAATGCGTTCCCACCGCGACTCTCACCACGGCTCTCGCGCCCCGAATCCAGTGCAACTGTAGCCCTGCAGTCTTCCAGCAATACTGGGGGTTCACCCGGTCTGAAGCGAGAGAGGATTCTCTTCACTAAGAGACCTTCGGTCAATGAgtaaaaatttataaaaaaagggAGGGAAGAACAGGGAACAAACAGAAGAGGAGGGAAAACGAGAGCGGGAACTTCACTTCGCCTGTCTGTCGGAGAAGTGCGTCAGTACCGTcgtttctgttctattttatgTAGTTTCtgttcgtttgtttgttttccagacatatatatcctcttgagaccttGCGTCCTCATAAGGGGACataacatttcagcttttctgCACCATGATACTGCACTTCTTAAACCCTTGACCTTTGACCGTATATGAAAGCACTACCCGTACCATCTAGTGTCCAATGAcattaaactcattaaaacaggaatcccagtcaaacgTTTCTACTGCCAGGCctgacagaaacatgggccagataAAAATCTCATCccattttatgtttgaaaatagtttattaacTTACTGTAAGAAgctaaaattttgtttttaggTCATTAGGTCCTATTAATGACAAATTTAAGAGAAATTAAAAGTCaaagtctgggtctcaggaggatatatatatatatatatatatatcactctcATCAtctcttttagcattttagccgTCTAGCAGACGCCGCTCGAGTacctcaaacaaacaaaacctgtcaggcatatttcattttttatgttttatcatcATGAAGGCTTTTTGATCTGCTCTTCCACAGATGtgcatatgcatatatatatatatataaaaaacacgtTTCCACGAACATTCACCCTCGCAGACTGCCGTCGTCACTTTGTCACAAGTACTGATAGAAACGGGACCGGACCACTTGGGTGCCGGAGAGTTTGTGGGGGTGGGCGTCAAGGTTTTTGCTTTGAGACGACGTCGCCGCGTCTCCGTTGAGCATCTGCAGCGCGCTGGAGGAGGAGCGCGAGGGTCCAGCAGCACAGATCAAGTCCAGGGTGTCCAGGCTCACCTCTGGGTTGCTGGCGCGATGGCGCTCTCGCACGATCCAGTCCGTGATGGAAAAGTCCTGGGAGCTGCACTTAGGCTTTAAGCGATCCATCGCCGAGAGTTCGGCGCCCTCGCTACCCTGCCAGCCACCGATGACCGAAAGTTCCACAAAGTCTCTTTGGCCGCCCATCGTGTGCCGCCGCCGGATGTTGGTCTTTCTTTTGCTGCGAGTCTCAGGCGACCTGGTGCGTTGAGATCCCACCCCAAACATGTCGTCCGCGGATGACCGCAGCCGGCACTTGAGTCTGTCTGTGATTCTGAGTCGCCAAACGGGTTCTAACCGCTCTCTTTCAGACTCGCTGCGAGACAGAACCGGGCTGCCGCTTGATTTGCTTGATTTGACCGGCTCCAGCATCCTCGACAGCCTGACGGACTCAATCTCGCTGCGGACACCGCCACCTCCGTCAGTCGAAGACTCGCTGTCTGTTTTCTGCCGGCTCCCTCGTTTGCGCGAGAGGGTATCGCACGCTATGATGCGATGAGACGCGATGAGGCTCGGCGGCTCTTGCATAGGTGTCGCTCTGCCTTCTGCAAGGTAGATCTCTTCTCCGGGAATGCAATCTCTGCCGGTCGCGAATACGGAAAGGTCGCTCTCGCTGTCTGTCTCCATGTGCCTTCCCTCGCTAATCAGTTCGCTCCTCTCGTCGTCGGCGTCGTCGTCCCCTCGGCTCTCGGCCACCGAGCGAACCTCCGGGCTCAAGGCACTGGACTCTACTCCGGTTAGAAAAGTCATGGAGGAAGTGGTGGAGTAATCCGAGGTGATGGAGCAAACCTCCGCCGCTCCAGTGTTCTCCGCCCAGTTGCCCGGGATCCTTCCCCTCCTCATCCTGGGACCTGAGGCCTGGGAACTGGTGCTGTTCAGCGTTCCCAGGTCTGAGATGCACCCTTCGTCGTAGTTGGACGGGGGATCAGATAGAGAGTTCTGGCGTGCCATCTGCGTGCGGTAGCTCAGACCGGGGAATTCGCTCGTTTTCTGGATGGACTGCGGGTGGTTCTGCAGGGGTATAAGCACTGAAGGAAGCTGCTGGTTGCTGGAAACTGCTACAGTGCTGTTCTGTCCTTCGCCGTGGTCCTCAGCATCCTCAGCACTTTCAAGTGGGTCACCGACACCGACCTCGCTCTCAGCCTCCTCGGTTTGGTCGTCGGTGGGCCAGTTCGGGTCGCTCTCCTCCTGGAGCTCCTTCTTGGAGAACACAGCGTCTAGGTCGTCGTCGGAGCTGCTCAGCTGAGTTTTGTCCTTGGGTTTTTTGCGCTTGCGACTGGCAAAGATGGAGGAGCGCAGCAGCTCTTTGCTATACTGGTCCTTACCAGACCCCCAGGAGCCCTGCT
>TU186636
TCAGAcacaaagcattttattttccagTGTTTTGAATGTCCCTCCACATTCAGAGTGGACACAGCATGATACAAACAGTCAAGGAAGCATTTTCTCCCCAAAACGCAGGGACCAGCGCCCCCTAGAGATGATGATTAGCATGGTCCAGTTCTCTCCCCAAACTTCCCTCTCTATCTACACTCCTGTATCGTACAATACTTACAGAAAAAGAAACTAAATCAGAAGAAGATGAGGGAACGGAGATGCTAAAACATGGAATAGATATGTACActtaagttattattttacagGAATATTTAAAATTCAAGTCTGGTTAAAATACCAActtcaaaaatgaaaatgaaaccgTAAAAAAAACGTGTTAAGACCAAAGTGGAATGCCGAAGGAAAGGAAGCTTCTCGTGAGATGtgtaggtttgtgtgttttgtcctCGAGCTGAGATTAAAATCTTCTTAATCACAGAACTTCTTATAGAGTTCGACAGAAAGTTATGGCACACTCATAAACCTGCGCCCGAACTGTTCCACATGAGGAACCTTCTTTTATCTAAATACATGGAACTGAATAATTCAATCCTCTACAATCTCCCTCctctataaatacagctctggataaaaaaaaaacaagagagcaattaaaaatgacgatttctttaattttatcaaattgaaaacctctggaatataatcaagaggaagacagatgatcacaaaccatcaaaccaccaaactgaactgcttgaatttttacaccaggagtaaagcagcataaagttatccaaaagcagtgtgtaagactggtggaggagaacatgatgccaagatgcatgaaaaaactgattaaaaactagccagggttattccaccaaatattgattttttgcattattttgagattttgtcttttcagccatttctcattttctgcaaatacatgctctaaatctaaatgacaatatttttatttgtaatttgggagaaattttgtctgtattttaaagaataaaagaacaatgttcattttactcaagtgctctctttattatatccagagctttttttatgtttgtttgttttatgttgaaactgattttaaaattgaTCCATTTTTGCAGTCATGAGCTTCGGCAAAGCGTCTGGCTTCTGCCATGCACTCTCActggttttaaaaatgaaaaaatgaacacaaaccCACGATACGGCACAGGAAGCAGTCCGAAATCAGgcccagagaaaaaaaaaaagaagtaaaaacaaGCAGGAGGGTGGAAACCGTTTCAAGTACAAGAGAGGATTGAGGAGCTCTATGtacagttaaaataaaagaCGCGAAAGCAcactgcttcttcttcttcttttcttttcttttataagTCTTACAGCAAGCAGATAAAATACATTCTTCATTTTGGTTGCAGAAGGACCAATCAATTTTTCAtatttccattcattcattcatttgatAATTCGTTCACAATTGAGAAGACCTCCTTTTCTACACTTGCAACAAAAAGTATTTCtagtaatacttaaaaaaaaagacactaaaAAACCTCTCGTCTCGTCTCATCGACATCCGATTCAATCCTACTACGACCCTATGACCTACTTCCGAGAACATTCGCCGCCATTCTGGCTCGAAATtatgctctttttttatttacgcATTTAATGCGTTCCCACCGCGACTCTCACCACGGCTCTCGCGCCCCGAATCCAGTGCAACTGTAGCCCTGCAGTCTTCCAGCAATACTGGGGGTTCACCCGGTCTGAAGCGAGAGAGGATTCTCTTCACTAAGAGACCTTCGGTCAATGAgtaaaaatttataaaaaaagggAGGGAAGAACAGGGAACAAACAGAAGAGGAGGGAAAACGAGAGCGGGAACTTCACTTCGCCTGTCTGTCGGAGAAGTGCGTCAGTACCGTcgtttctgttctattttatgTAGTTTCtgttcgtttgtttgttttccagacatatatatcctcttgagaccttGCGTCCTCATAAGGGGACataacatttcagcttttctgCACCATGATACTGCACTTCTTAAACCCTTGACCTTTGACCGTATATGAAAGCACTACCCGTACCATCTAGTGTCCAATGAcattaaactcattaaaacaggaatcccagtcaaacgTTTCTACTGCCAGGCctgacagaaacatgggccagataAAAATCTCATCccattttatgtttgaaaatagtttattaacTTACTGTAAGAAgctaaaattttgtttttaggTCATTAGGTCCTATTAATGACAAATTTAAGAGAAATTAAAAGTCaaagtctgggtctcaggaggatatatatatatatatatatatatcactctcATCAtctcttttagcattttagccgTCTAGCAGACGCCGCTCGAGTacctcaaacaaacaaaacctgtcaggcatatttcattttttatgttttatcatcATGAAGGCTTTTTGATCTGCTCTTCCACAGATGtgcatatgcatatatatatatatataaaaaacacgtTTCCACGAACATTCACCCTCGCAGACTGCCGTCGTCACTTTGTCACAAGTACTGATAGAAACGGGACCGGACCACTTGGGTGCCGGAGAGTTTGTGGGGGTGGGCGTCAAGGTTTTTGCTTTGAGACGACGTCGCCGCGTCTCCGTTGAGCATCTGCAGCGCGCTGGAGGAGGAGCGCGAGGGTCCAGCAGCACAGATCAAGTCCAGGGTGTCCAGGCTCACCTCTGGGTTGCTGGCGCGATGGCGCTCTCGCACGATCCAGTCCGTGATGGAAAAGTCCTGGGAGCTGCACTTAGGCTTTAAGCGATCCATCGCCGAGAGTTCGGCGCCCTCGCTACCCTGCCAGCCACCGATGACCGAAAGTTCCACAAAGTCTCTTTGGCCGCCCATCGTGTGCCGCCGCCGGATGTTGGTCTTTCTTTTGCTGCGAGTCTCAGGCGACCTGGTGCGTTGAGATCCCACCCCAAACATGTCGTCCGCGGATGACCGCAGCCGGCACTTGAGTCTGTCTGTGATTCTGAGTCGCCAAACGGGTTCTAACCGCTCTCTTTCAGACTCGCTGCGAGACAGAACCGGGCTGCCGCTTGATTTGCTTGATTTGACCGGCTCCAGCATCCTCGACAGCCTGACGGACTCAATCTCGCTGCGGACACCGCCACCTCCGTCAGTCGAAGACTCGCTGTCTGTTTTCTGCCGGCTCCCTCGTTTGCGCGAGAGGGTATCGCACGCTATGATGCGATGAGACGCGATGAGGCTCGGCGGCTCTTGCATAGGTGTCGCTCTGCCTTCTGCAAGGTAGATCTCTTCTCCGGGAATGCAATCTCTGCCGGTCGCGAATACGGAAAGGTCGCTCTCGCTGTCTGTCTCCATGTGCCTTCCCTCGCTAATCAGTTCGCTCCTCTCGTCGTCGGCGTCGTCGTCCCCTCGGCTCTCGGCCACCGAGCGAACCTCCGGGCTCAAGGCACTGGACTCTACTCCGGTTAGAAAAGTCATGGAGGAAGTGGTGGAGTAATCCGAGGTGATGGAGCAAACCTCCGCCGCTCCAGTGTTCTCCGCCCAGTTGCCCGGGATCCTTCCCCTCCTCATCCTGGGACCTGAGGCCTGGGAACTGGTGCTGTTCAGCGTTCCCAGGTCTGAGATGCACCCTTCGTCGTAGTTGGACGGGGGATCAGATAGAGAGTTCTGGCGTGCCATCTGCGTGCGGTAGCTCAGACCGGGGAATTCGCTCGTTTTCTGGATGGACTGCGGGTGGTTCTGCAGGGGTATAAGCACTGAAGGAAGCTGCTGGTTGCTGGAAACTGCTACAGTGCTGTTCTGTCCTTCGCCGTGGTCCTCAGCATCCTCAGCACTTTCAAGTGGGTCACCGACACCGACCTCGCTCTCAGCCTCCTCGGTTTGGTCGTCGGTGGGCCAGTTCGGGTCGCTCTCCTCCTGGAGCTCCTTCTTGGAGAACACAGCGTCTAGGTCGTCGTCGGAGCTGCTCAGCTGAGTTTTGTCCTTGGGTTTTTTGCGCTTGCGACTGGCAAAGATGGAGGAGCGCAGCAGCTCTTTGCTATACTGGTCCTTACCAGACCCCCAGGAGCCCTGCT

Function

NR:

description
PREDICTED: rho GTPase-activating protein 21-like isoform X6

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU186635 False 3378 lncRNA 0.48 3 2207367 2237690
TU186636 True 4119 lncRNA 0.46 2 2233549 2237690

Neighbor

gene id symbol gene type direction distance location
LOC103042278 NA coding upstream 292348 1869474 ~ 1915019 (+)
kdsr kdsr,LOC106569188,LOC102792240 coding upstream 346852 1855297 ~ 1860515 (+)
LOC103043726 LOC103043726,LOC105899208 coding upstream 390155 1810725 ~ 1817212 (+)
tsc22d2 NA coding upstream 405048 1777225 ~ 1802319 (+)
LOC111194259 NA coding upstream 461129 1740171 ~ 1746238 (+)
LOC103042593 LOC108430758 coding downstream 84348 2322038 ~ 2362870 (+)
LOC103040438 pcyt1a,LOC103040438,LOC108430756,LOC108267677,LOC107709348,LOC107671662,LOC107727528 coding downstream 158267 2395957 ~ 2405369 (+)
LOC103040954 anxa13,anxa13l,LOC103040954,LOC107727547,LOC108267681,LOC107559374 coding downstream 185218 2422908 ~ 2431028 (+)
LOC103041271 LOC108430753 coding downstream 227641 2465331 ~ 2473513 (+)
tsen15 tsen15,LOC107681748 coding downstream 236371 2474061 ~ 2476180 (+)
G137930 NA non-coding upstream 178559 2025193 ~ 2028808 (+)
G137917 LOC108430762,LOC108267465 non-coding upstream 218901 1987814 ~ 1988466 (+)
G137902 NA non-coding upstream 282512 1921553 ~ 1924855 (+)
G137831 NA non-coding upstream 288956 1916147 ~ 1918411 (+)
G137898 NA non-coding upstream 327975 1879072 ~ 1879392 (+)
G137951 arhgap21b,LOC108267702 non-coding downstream 6826 2244516 ~ 2245661 (+)
G137960 NA non-coding downstream 51402 2289092 ~ 2292464 (+)
G137965 LOC108430757 non-coding downstream 112944 2350634 ~ 2371378 (+)
G137972 NA non-coding downstream 148820 2386510 ~ 2480525 (+)
G137973 NA non-coding downstream 152503 2390193 ~ 2390812 (+)
G137929 NA other upstream 182981 2022755 ~ 2024386 (+)
LOC103042893 vps4b,LOC107727524,LOC107681797,LOC107710065 other upstream 356054 1835477 ~ 1851313 (+)
G137826 LOC108430781,LOC108267757 other upstream 707411 1491816 ~ 1499956 (+)
mrps14 mrps14 other upstream 1167397 1037861 ~ 1039970 (+)
G137756 kiaa0040 other upstream 1218729 980980 ~ 988638 (+)
LOC103045052 cfap57,LOC106594647 other downstream 662785 2900475 ~ 2936129 (+)
LOC103024858 NA other downstream 844366 3082056 ~ 3084865 (+)
LOC103026108 selenot,selt1a,LOC107681817,LOC107708642 other downstream 877730 3115420 ~ 3119488 (+)
LOC103047488 pls1,LOC108437523,LOC107722705,LOC107656864,LOC107565818,LOC107599860,LOC107709028,LOC107681752 other downstream 1564163 3801853 ~ 3839372 (+)
G138701 NA other downstream 1595565 3833255 ~ 3834460 (+)

Expression


Co-expression Network