G40772


Basic Information

Item Value
gene id G40772
gene name NA
gene type unknown
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 475465 ~ 479194 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU46274
TCAGAATCTCTGATCTCACGCAAGCAGTCATGGCGGATAAGGATCCATTCCGGCAGCTGAAAGATCTGTCCCTGCTTAAAGACCAGCTCGAAGACATTCAGCGTCGGATGGAGGATGAAGTTGGGGTTGGAATTCCACAGGGTGGAAGTGTGCTCAGTTCTCCCTTCCTCAAAGGTTTTTTGGCTGGGTATGTGGTGGCAAAGCTCCGCTCCTCTGCGATCCTGGGAGTTCTTGTAGGGACCTGCACAGGCATCTATGCTGCTCAGAGCTATCAAGTGCCTAACATTGAGCAGACCATTAAAAACTACTTCAGCTCATTCAAGAAGAGATAGAGGGAGCCATATCAAACAATCTCAGAAAAATGGTGCCTCATTCAAGAACTTCAACATGTACCTCCTCAACTGAAGGTGCCACTCATCAGACCACATAGAAAAACTGGATGTATTTAAATGACACTTTGGTATATAAAATAATTGAGCTTCTCATGTTAGCAGTTTTAGGTTGTTTTCTATTTAAAGTTGGTGTGGGCTGTGCTGTTACAGTGTTTTGATTTTATATATACCAAAATTCCTCATGATGGTGCAAATGGCCAAAACTTTATCAGTCTTTCATATAGTTTCGGTGTTAATGCATGTATGTTCTGTCTGTTACATAAATATTTTTTCCAATAATCTTTTTTTAATAGAAGTTTGCACAAAAACAGGTGAGCAATCAAACACAACACACTCTGTAAATAATGTCTGCCATTGAACAATTCCTACCTGTCAAATGTCAGAGGTTGCTGGACTTGAGTAGCTTAAGTATTTTATATAATTGTTGGATAAATATATGTTGGATAAATATGTTGCACTTTACCAATCGCAACTCTACCACTTCTGCTTGTAATAAATAATGGAAGTCAGCCATTGGAAGTGAAATAGAAAACAGGAAGTAGTCCAATTAGAGAATGAAAACTAATCTACATGCATTTGGTTTTCAGATGGAGTATTGAATTCATTTGTATGGTTTTAAAATGTAATGCATCATGTTTCTATGTAAAGAATTATTTCAAAATTATAGTTTTCAATAATGGGATTTATTTTCTTTGCTTAATGTTCTTTTGTTTTGGCTTTGGGTTTATTGCCATAATGTGATATATTTTTTGGAGAGATTCTGTTTTAATGAATAAAATCTCAAATTGCAATCTATAGTAAAA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU46274 True 1195 TUCP 0.36 3 475465 479194

Neighbor

gene id symbol gene type direction distance location
CI01000006_00423835_00428157 NA coding upstream 47096 423093 ~ 428369 (+)
CI01000006_00418370_00420217 SPAG16 coding upstream 55148 418370 ~ 420317 (+)
CI01000006_00363989_00372189 NA coding upstream 103201 363989 ~ 372264 (+)
CI01000006_00315992_00319208 NA coding upstream 156079 315062 ~ 319386 (+)
CI01000006_00297085_00312816 CORO6 coding upstream 162410 297085 ~ 313055 (+)
CI01000006_00502041_00503898 NA coding downstream 22847 502041 ~ 504306 (+)
CI01000006_00537552_00548276 NA coding downstream 58258 537452 ~ 548591 (+)
CI01000006_00586425_00608567 NA coding downstream 106774 585968 ~ 609091 (+)
CI01000006_00612891_00618198 RBM22.S, RBM22 coding downstream 132793 611987 ~ 618372 (+)
CI01000006_00647015_00654423 NA coding downstream 167821 647015 ~ 655017 (+)
G40811 NA non-coding upstream 121502 353720 ~ 353963 (+)
G40800 NA non-coding upstream 170199 305007 ~ 305266 (+)
G40799 NA non-coding upstream 172238 303015 ~ 303227 (+)
G40797 NA non-coding upstream 176273 298960 ~ 299192 (+)
G40796 NA non-coding upstream 176739 298411 ~ 298726 (+)
G40768 NA non-coding downstream 9213 488407 ~ 493026 (+)
G40852 NA non-coding downstream 49934 529128 ~ 551356 (+)
G40904 NA non-coding downstream 147539 626733 ~ 630432 (+)
CI01000006_00666971_00667988 NA non-coding downstream 178508 666793 ~ 668405 (+)
G40935 NA non-coding downstream 235710 714904 ~ 715650 (+)
G40767 NA other downstream 1438 360009 ~ 484185 (+)
G41170 NA other downstream 1212871 1692065 ~ 1695821 (+)
G41424 NA other downstream 2166468 2645662 ~ 2660570 (+)
G41591 NA other downstream 2356973 2836167 ~ 2839421 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_019742 NA non-coding NC_007132.7 CM002905.2 33465275 ~ 33477963 (-)