G137965 (LOC108430757)


Basic Information

Item Value
gene id G137965
gene name LOC108430757
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 2350634 ~ 2371378 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU186665
gctgaactgcttgaatttttgcaccaggagtaaagcagcataaagttatccaaaagcagtgtgtaagactggtggaggaggagaacatgatgccaaggaacttgttttctttacattatttgaggtttgaaagctctgcatcttttttgttagttcagccgtctctcattttctgcaaataaatgctttttcttaaatgcttttttttcccatattttttcagagctgtatatatacatacactgtGAAAAGTGAACATATCTGATTTTTGACCGAACTATCTCTATAAATTCTCCAGCAgttgaggtgttttttttgtttttccaatcTAACAGTAAGGCAATTATAGTTTCACTAGGTTTTTATCTGTAGTTCAGAAGGCTGTAGGTACAGGTTCAGGCATTTGGCCACTCAGTCACATGATATCTACAAAGAACTCCCCATTGGCTGTGCTGCAGGAGCGGCGGGAGCCGGTGAGCTCTGAGGGCACGTGGGCGAGGTGGCGTCCTGACGGAGACCCCGGCGTGGCTCGAGCCGCCGCGTGCATTAGGCTGTACGTGTGAGAGCGGGCGCTGCGCACACTGCCCTCACTAGGGGGCGCTGCTGAACGTTCGCTGGGCGCTCGCTCTCGGCGGAAGTCAAACTCTGACCCAGGTCCCGTCTCGCTCGGTCCGGCCAGCCTGAAATCTGCCGGCCCCGCCCTCCCCTCCATCCGGCTCCAGCTGCAGTTCGAG

Function

NR:

description
PREDICTED: segment polarity protein dishevelled homolog DVL-3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU186665 True 734 lncRNA 0.50 2 2350634 2371378

Neighbor

gene id symbol gene type direction distance location
dpp6 LOC108430761,LOC108267703 coding upstream 120569 2102221 ~ 2230065 (+)
LOC103042278 NA coding upstream 435615 1869474 ~ 1915019 (+)
kdsr kdsr,LOC106569188,LOC102792240 coding upstream 490119 1855297 ~ 1860515 (+)
LOC103043726 LOC103043726,LOC105899208 coding upstream 533422 1810725 ~ 1817212 (+)
tsc22d2 NA coding upstream 548315 1777225 ~ 1802319 (+)
LOC103040438 pcyt1a,LOC103040438,LOC108430756,LOC108267677,LOC107709348,LOC107671662,LOC107727528 coding downstream 24579 2395957 ~ 2405369 (+)
LOC103040954 anxa13,anxa13l,LOC103040954,LOC107727547,LOC108267681,LOC107559374 coding downstream 51530 2422908 ~ 2431028 (+)
LOC103041271 LOC108430753 coding downstream 93953 2465331 ~ 2473513 (+)
tsen15 tsen15,LOC107681748 coding downstream 102683 2474061 ~ 2476180 (+)
LOC103042800 NA coding downstream 122586 2493964 ~ 2507127 (+)
G137960 NA non-coding upstream 58170 2289092 ~ 2292464 (+)
G137951 arhgap21b,LOC108267702 non-coding upstream 104973 2244516 ~ 2245661 (+)
G137943 LOC108430760 non-coding upstream 112944 2207367 ~ 2237690 (+)
G137930 NA non-coding upstream 321826 2025193 ~ 2028808 (+)
G137917 LOC108430762,LOC108267465 non-coding upstream 362168 1987814 ~ 1988466 (+)
G137972 NA non-coding downstream 15132 2386510 ~ 2480525 (+)
G137973 NA non-coding downstream 18815 2390193 ~ 2390812 (+)
G137975 NA non-coding downstream 22618 2393996 ~ 2394911 (+)
G137977 NA non-coding downstream 29179 2400557 ~ 2400842 (+)
G137978 NA non-coding downstream 35878 2407256 ~ 2408538 (+)
G137929 NA other upstream 326248 2022755 ~ 2024386 (+)
LOC103042893 vps4b,LOC107727524,LOC107681797,LOC107710065 other upstream 499321 1835477 ~ 1851313 (+)
G137826 LOC108430781,LOC108267757 other upstream 850678 1491816 ~ 1499956 (+)
mrps14 mrps14 other upstream 1310664 1037861 ~ 1039970 (+)
G137756 kiaa0040 other upstream 1361996 980980 ~ 988638 (+)
LOC103045052 cfap57,LOC106594647 other downstream 529097 2900475 ~ 2936129 (+)
LOC103024858 NA other downstream 710678 3082056 ~ 3084865 (+)
LOC103026108 selenot,selt1a,LOC107681817,LOC107708642 other downstream 744042 3115420 ~ 3119488 (+)
LOC103047488 pls1,LOC108437523,LOC107722705,LOC107656864,LOC107565818,LOC107599860,LOC107709028,LOC107681752 other downstream 1430475 3801853 ~ 3839372 (+)
G138701 NA other downstream 1461877 3833255 ~ 3834460 (+)

Expression


Co-expression Network