XLOC_000721


Basic Information

Item Value
gene id XLOC_000721
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 54698173 ~ 54700755 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00003180
ttgtgttaataaacactttatttttactctCGTAAACACATGACCTCTCAAAACAGTTACAGACACAAGGACAGAATGAGGAAAAGATATCAACATAAGACATATTTCCAAAAGTTCTGAATAAAAGCAGCAAGAGGTAAACAAAGTCATCTCTTAGTGACTATTTGTGCGGATCATGTGCTTTAAAGAGTTAGAAAACTGCGCCGCCAGATGTTATTGCTCTATACACTTCAAATCTTGcaacaaaaaatacacaaaagtCTACCAGTTGGCTTTCCTAAGCTCTGTTTATGTACATCTGTATCAAATGCAGACTATAATACACGAGAGTAAACCTCACGAAAGCTTGCCAGTGTCATATCTCACTCACTTAAAagatcatttgcatatttaataatactttCAAGCACATTTTATAACCTAATTCTCCTGTAAATTAGTGCTAGTGCTTAATGTATAAGCATGTAGTAGTACTTAAACTATACCATTCATCAGtgagaataatatatatatatatgattacaaAAGCAACCCTTTGTGATGCATTACAGTGCTGAGAATTTCAGGCTATATACTGAATATGCTTTACTGAAACcatcacaatgcaaacaatacCTCAAAGTGGCTTCATGCTAATCATTTTGGATCAGTGGGATGAAATGTGACCTATTGGCAAGCTTTCGAAAGGATTTACTCGAACTCAAAGCTCTTGAACGTTCCCTCAGGAGGTCTGTGTACATGTCATGAAATAGTTTCTGAGCTTGTAATGGCGTTGAAAGTGTGTGATCTTACAGTCTCAGGTGTGTCAGAGCATCTGAATACTGCTTAGGTATGCAACTACATTCAGATCGTGGTCATGTGATGCTCTgactgtgtgtagtttgcattcGCAGGGCAGTGTGGAATGTGACGGGAAGAGCCAGATTCACACCTTGAATTCCAGTGGGTGTGGTTAGGgacgtgtttttttttaagctgctATTCAAGTGGGTGTGGTCAGGGGCGTGTCTTTAAAGCTGTTGCAGTGGGTGTGGCCAGGGACATGCTATTGAAGCTGCACATTCCAGTGGGTGTGGTCAGGAGCGTGTCTATGAAGCAAGTGTGGTCAGGGGCGTGTCTTTAAAGCTGTTGCAGTGGGTGTGGCCAGGGACATGTTATTGAAGCTGCACATTCAAGTGGGTGTGGTCAGGGGCATGTCATTCAAGTTTTGTTCCAGTTGGCATGTCTTTGAAGCGGTGCCTTCCAGTGGGTGTGGCCAGGGGAGTGTCTTTGAAGTTTTGTTCCAATGGTCATGTCTTTGAAGCTGTTGCAGTGGGTGTGGTAAGCGGCGTGCCTAAAGTTTCTTTCCAGTGGGCATGTCTTTGAAGAGAGTTTAAATATTTGGGTTGAAGTGGGTGTGGTCAGGGGCATGTCTTTTGTAGCTGCGCCTACAAGTGGGTGTGGTCAGGGACGTGTCTGAAGTTTTGGGTTGCAGTGGGTGTGGCCAGGGTCATGTCTTTGAAGTTTTGTGTTCCAGTGTGTGGTCAGGGTGTCTTTGTAGCTGCATATTGAAGTGGGTGTGGTCAGGGGCGTGTATTTAAAGTTGTGCGTTCTAATGAGCGTGTCCTTGAAGCTGCATGTTCCTGTGAGTGTGGAGAGGGGTGTGTCTTTAAAGCTGCGCATTGAAGTGGGTCTGGCCAGAGGCATGGCCTTGAAGCCGTGCGTTCCAATGGGTGTGGCCAATGACGTGTTGTGGATTTTAAAGGGCGTCTCTTTGAAGATTTATTTTCCAGTAGGTGTGGTCAAGAGCATGTTCTTCAAGTTTTGCATTATAGTGGGTGTGGTCAGGGCCGTGTTTTAAAAACTGTTCCAATAAGCGTGCCTTTGAAGTTGTGGGTGTGGCCAAGGACGTGTTTATAAAGTTGTATCTTCCAGTGGGTGTGGCCAGGGGCGTGTCTTTGAAGCAGTGCATTCCAAGAGGCATTTCTTTGAAGCTTTATATTTGAATGGGCGTGTATTTTGAAGCTGTGTCCCTCCCAGTGGGTGTGGTCAGGGGAGTATCTATGAAGCTGTGCATTCCAATAGGCATGTCTTTAAGGTTTATATTTGAATGGGCGAGTCTTTGAAGCTGTGTCCCCCAGTAGGTGTGGTCAGGGGCGTGTCTTTGAAGCCATGCATTCCAAAAGGCATGTCTTTGAAGCTTTACATTCCAATGGGCGTGTTTTTGAAGCTGTGTGTTCCAGTGGGTGTGGTCAGGGGCGTGGTCAGGCCTGCAGGTACTCCGGCTGTACCCGTGCAACTTTGCGAAACTCTTTGGAGTGTGTGCGAGGACACTGCATCTCACACCAG
>TCONS_00003181
aaacactttatttttactctCGTAAACACATGACCTCTCAAAACAGTTACAGACACAAGGACAGAATGAGGAAAAGATATCAACATAAGACATATTTCCAAAAGTTCTGAATAAAAGCAGCAAGAGGTAAACAAAGTCATCTCTTAGTGACTATTTGTGCGGATCATGTGCTTTAAAGAGTTAGAAAACTGCGCCGCCAGATGTTATTGCTCTATACACTTCAAATCTTGcaacaaaaaatacacaaaagtCTACCAGTTGGCTTTCCTAAGCTCTGTTTATGTACATCTGTATCAAATGCAGACTATAATACACGAGAGTAAACCTCACGAAAGCTTGCCAGTGTCATATCTCACTCACTTAAAagatcatttgcatatttaataatactttCAAGCACATTTTATAACCTAATTCTCCTGTAAATTAGTGCTAGTGCTTAATGTATAAGCATGTAGTAGTACTTAAACTATACCATTCATCAGtgagaataatatatatatatatgattacaaAAGCAACCCTTTGTGATGCATTACAGTGCTGAGAATTTCAGGCTATATACTGAATATGCTTTACTGAAACcatcacaatgcaaacaatacCTCAAAGTGGCTTCATGCTAATCATTTTGGATCAGTGGGATGAAATGTGACCTATTGGCAAGCTTTCGAAAGGATTTACTCGAACTCAAAGCTCTTGAACGTTCCCTCAGGAGGTCTGTGTACATGTCATGAAATAGTTTCTGAGCTTGTAATGGCGTTGAAAGTGTGTGATCTTACAGTCTCAGGTGTGTCAGAGCATCTGAATACTGCTTAGGTATGCAACTACATTCAGATCGTGGTCATGTGATGCTCTgactgtgtgtagtttgcattcGCAGGGCAGTGTGGAATGTGACGGGAAGAGCCAGATTCACACCTTGAATTCCAGTGGGTGTGGTTAGGgacgtgtttttttttaagctgctATTCAAGTGGGTGTGGTCAGGGGCGTGTCTTTAAAGCTGTTGCAGTGGGTGTGGCCAGGGACATGCTATTGAAGCTGCACATTCCAGTGGGTGTGGTCAGGAGCGTGTCTATGAAGCAAGTGTGGTCAGGGGCGTGTCTTTAAAGCTGTTGCAGTGGGTGTGGCCAGGGACATGTTATTGAAGCTGCACATTCAAGTGGGTGTGGTCAGGGGCATGTCATTCAAGTTTTGTTCCAGTTGGCATGTCTTTGAAGCGGTGCCTTCCAGTGGGTGTGGCCAGGGGAGTGTCTTTGAAGTTTTGTTCCAATGGTCATGTCTTTGAAGCTGTTGCAGTGGGTGTGGTAAGCGGCGTGCCTAAAGTTTCTTTCCAGTGGGCATGTCTTTGAAGAGAGTTTAAATATTTGGGTTGAAGTGGGTGTGGTCAGGGGCATGTCTTTTGTAGCTGCGCCTACAAGTGGGTGTGGTCAGGGACGTGTCTGAAGTTTTGGGTTGCAGTGGGTGTGGCCAGGGTCATGTCTTTGAAGTTTTGTGTTCCAGTGTGTGGTCAGGGTGTCTTTGTAGCTGCATATTGAAGTGGGTGTGGTCAGGGGCGTGTATTTAAAGTTGTGCGTTCTAATGAGCGTGTCCTTGAAGCTGCATGTTCCTGTGAGTGTGGAGAGGGGTGTGTCTTTAAAGCTGCGCATTGAAGTGGGTCTGGCCAGAGGCATGGCCTTGAAGCCGTGCGTTCCAATGGGTGTGGCCAATGACGTGTTGTGGATTTTAAAGGGCGTCTCTTTGAAGATTTATTTTCCAGTAGGTGTGGTCAAGAGCATGTTCTTCAAGTTTTGCATTATAGTGGGTGTGGTCAGGGCCGTGTTTTAAAAACTGTTCCAATAAGCGTGCCTTTGAAGTTGTGGGTGTGGCCAAGGACGTGTTTATAAAGTTGTATCTTCCAGTGGGTGTGGCCAGGGGCGTGTCTTTGAAGCAGTGCATTCCAAGAGGCATTTCTTTGAAGCTTTATATTCCAATGGGCGTGTTTTTGAAGCTGTGTGTTCCAGTGGGTGTGGTCAGGGGCGTGGTCAGGCCTGCAGGTACTCCGGCTGTACCCGTGCAACTTTGCGAAACTCTTTGGAGTGTGTGCGAGGACACTGCATCTCACACCAG
>TCONS_00003182
ctttatttttactctCGTAAACACATGACCTCTCAAAACAGTTACAGACACAAGGACAGAATGAGGAAAAGATATCAACATAAGACATATTTCCAAAAGTTCTGAATAAAAGCAGCAAGAGGTAAACAAAGTCATCTCTTAGTGACTATTTGTGCGGATCATGTGCTTTAAAGAGTTAGAAAACTGCGCCGCCAGATGTTATTGCTCTATACACTTCAAATCTTGcaacaaaaaatacacaaaagtCTACCAGTTGGCTTTCCTAAGCTCTGTTTATGTACATCTGTATCAAATGCAGACTATAATACACGAGAGTAAACCTCACGAAAGCTTGCCAGTGTCATATCTCACTCACTTAAAagatcatttgcatatttaataatactttCAAGCACATTTTATAACCTAATTCTCCTGTAAATTAGTGCTAGTGCTTAATGTATAAGCATGTAGTAGTACTTAAACTATACCATTCATCAGtgagaataatatatatatatatgattacaaAAGCAACCCTTTGTGATGCATTACAGTGCTGAGAATTTCAGGCTATATACTGAATATGCTTTACTGAAACcatcacaatgcaaacaatacCTCAAAGTGGCTTCATGCTAATCATTTTGGATCAGTGGGATGAAATGTGACCTATTGGCAAGCTTTCGAAAGGATTTACTCGAACTCAAAGCTCTTGAACGTTCCCTCAGGAGGTCTGTGTACATGTCATGAAATAGTTTCTGAGCTTGTAATGGCGTTGAAAGTGTGTGATCTTACAGTCTCAGGTGTGTCAGAGCATCTGAATACTGCTTAGGTATGCAACTACATTCAGATCGTGGTCATGTGATGCTCTgactgtgtgtagtttgcattcGCAGGGCAGTGTGGAATGTGACGGGAAGAGCCAGATTCACACCTTGAATTCCAGTGGGTGTGGTTAGGgacgtgtttttttttaagctgctATTCAAGTGGGTGTGGTCAGGGGCGTGTCTTTAAAGCTGTTGCAGTGGGTGTGGCCAGGGACATGCTATTGAAGCTGCACATTCCAGTGGGTGTGGTCAGGAGCGTGTCTATGAAGCAAGTGTGGTCAGGGGCGTGTCTTTAAAGCTGTTGCAGTGGGTGTGGCCAGGGACATGTTATTGAAGCTGCACATTCAAGTGGGTGTGGTCAGGGGCGTGTCTTTGAAGCCATGCATTCCAAAAGGCATGTCTTTGAAGCTTTACATTCCAATGGGCGTGTTTTTGAAGCTGTGTGTTCCAGTGGGTGTGGTCAGGGGCGTGGTCAGGCCTGCAGGTACTCCGGCTGTACCCGTGCAACTTTGCGAAACTCTTTGGAGTGTGTGCGAGGACACTGCATCTCACACCAG

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0042737 drug catabolic process biological_process
GO:1901564 organonitrogen compound metabolic process biological_process
GO:0009063 cellular amino acid catabolic process biological_process
GO:0009072 aromatic amino acid family metabolic process biological_process
GO:0009074 aromatic amino acid family catabolic process biological_process
GO:1901606 alpha-amino acid catabolic process biological_process
GO:0046395 carboxylic acid catabolic process biological_process
GO:0044282 small molecule catabolic process biological_process
GO:0006508 proteolysis biological_process
GO:1902221 erythrose 4-phosphate/phosphoenolpyruvate family amino acid metabolic process biological_process
GO:1902222 erythrose 4-phosphate/phosphoenolpyruvate family amino acid catabolic process biological_process
GO:0006558 L-phenylalanine metabolic process biological_process
GO:0006559 L-phenylalanine catabolic process biological_process
GO:0006570 tyrosine metabolic process biological_process
GO:0006572 tyrosine catabolic process biological_process
GO:0016054 organic acid catabolic process biological_process
GO:0044421 obsolete extracellular region part cellular_component
GO:0005576 extracellular region cellular_component
GO:0005615 extracellular space cellular_component
GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen molecular_function
GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen molecular_function
GO:0004175 endopeptidase activity molecular_function
GO:0004180 carboxypeptidase activity molecular_function
GO:0004497 monooxygenase activity molecular_function
GO:0004252 serine-type endopeptidase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0008233 peptidase activity molecular_function
GO:0008235 metalloexopeptidase activity molecular_function
GO:0008236 serine-type peptidase activity molecular_function
GO:0008237 metallopeptidase activity molecular_function
GO:0008238 exopeptidase activity molecular_function
GO:0140096 catalytic activity, acting on a protein molecular_function
GO:0017171 serine hydrolase activity molecular_function
GO:0003824 catalytic activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00003180 False 2328 lncRNA 0.45 2 54698173 54700755
TCONS_00003181 False 2112 lncRNA 0.44 3 54698183 54700755
TCONS_00003182 True 1369 lncRNA 0.42 3 54698188 54700755

Neighbor

gene id symbol gene type direction distance location
XLOC_000720 knop1 coding upstream 4161 54683655 ~ 54694012 (+)
XLOC_000719 gprc5bb coding upstream 18070 54673846 ~ 54680103 (+)
XLOC_000718 si:ch211-202h22.7 coding upstream 38250 54650048 ~ 54659923 (+)
XLOC_000717 si:ch211-202h22.8 coding upstream 49407 54638126 ~ 54648766 (+)
XLOC_000716 si:ch211-202h22.9 coding upstream 60795 54626491 ~ 54637378 (+)
XLOC_000722 pi4k2a coding downstream 36598 54737353 ~ 54755556 (+)
XLOC_000723 nlrc6 coding downstream 66188 54766943 ~ 54785183 (+)
XLOC_000724 si:ch211-196h16.4 coding downstream 133364 54834119 ~ 54861588 (+)
XLOC_000725 si:ch211-196h16.5 coding downstream 164797 54865552 ~ 54889501 (+)
XLOC_000726 zfyve27 coding downstream 188978 54889733 ~ 54907823 (+)
XLOC_000715 NA non-coding upstream 84694 54611838 ~ 54613479 (+)
XLOC_000712 NA non-coding upstream 228884 54277243 ~ 54469289 (+)
XLOC_000713 NA non-coding upstream 294026 54401933 ~ 54404147 (+)
XLOC_000710 CABZ01067150.1 non-coding upstream 512017 54186039 ~ 54186156 (+)
XLOC_000703 NA non-coding upstream 709397 53982614 ~ 53988776 (+)
XLOC_000729 NA non-coding downstream 258737 54959492 ~ 54985297 (+)
XLOC_000733 CU467849.1 non-coding downstream 427710 55128465 ~ 55128579 (+)
XLOC_000735 NA non-coding downstream 484009 55184764 ~ 55191262 (+)
XLOC_000741 NA non-coding downstream 613719 55314474 ~ 55579436 (+)
XLOC_000742 NA non-coding downstream 625811 55326566 ~ 55343851 (+)

Expression


Co-expression Network