Gene
RNA
| Item | Value |
|---|---|
| gene id | G40768 |
| gene name | NA |
| gene type | misc |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000006 |
| NCBI id | null |
| chromosome length | 13024002 |
| location | 488407 ~ 493026 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| description |
|---|
| leucine-rich repeat-containing protein 4C-like |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU46270 | False | 754 | lncRNA | 0.48 | 3 | 488407 | 492312 |
| TU46268 | False | 427 | lncRNA | 0.49 | 2 | 488875 | 492312 |
| TU46269 | True | 474 | TUCP | 0.49 | 3 | 488875 | 493026 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000006_00423835_00428157 | NA | coding | upstream | 60038 | 423093 ~ 428369 (+) |
| CI01000006_00418370_00420217 | SPAG16 | coding | upstream | 68090 | 418370 ~ 420317 (+) |
| CI01000006_00363989_00372189 | NA | coding | upstream | 116143 | 363989 ~ 372264 (+) |
| CI01000006_00315992_00319208 | NA | coding | upstream | 169021 | 315062 ~ 319386 (+) |
| CI01000006_00297085_00312816 | CORO6 | coding | upstream | 175352 | 297085 ~ 313055 (+) |
| CI01000006_00502041_00503898 | NA | coding | downstream | 9729 | 502041 ~ 504306 (+) |
| CI01000006_00537552_00548276 | NA | coding | downstream | 45140 | 537452 ~ 548591 (+) |
| CI01000006_00586425_00608567 | NA | coding | downstream | 93656 | 585968 ~ 609091 (+) |
| CI01000006_00612891_00618198 | RBM22.S, RBM22 | coding | downstream | 119675 | 611987 ~ 618372 (+) |
| CI01000006_00647015_00654423 | NA | coding | downstream | 154703 | 647015 ~ 655017 (+) |
| G40767 | NA | non-coding | upstream | 4222 | 360009 ~ 484185 (+) |
| G40811 | NA | non-coding | upstream | 134444 | 353720 ~ 353963 (+) |
| G40800 | NA | non-coding | upstream | 183141 | 305007 ~ 305266 (+) |
| G40799 | NA | non-coding | upstream | 185180 | 303015 ~ 303227 (+) |
| G40797 | NA | non-coding | upstream | 189215 | 298960 ~ 299192 (+) |
| G40852 | NA | non-coding | downstream | 36816 | 529128 ~ 551356 (+) |
| G40904 | NA | non-coding | downstream | 134421 | 626733 ~ 630432 (+) |
| CI01000006_00666971_00667988 | NA | non-coding | downstream | 165390 | 666793 ~ 668405 (+) |
| G40935 | NA | non-coding | downstream | 222592 | 714904 ~ 715650 (+) |
| G40925 | NA | non-coding | downstream | 231509 | 723821 ~ 786328 (+) |
| G40772 | NA | other | upstream | 9213 | 475465 ~ 479194 (+) |
| G41170 | NA | other | downstream | 1199753 | 1692065 ~ 1695821 (+) |
| G41424 | NA | other | downstream | 2153350 | 2645662 ~ 2660570 (+) |
| G41591 | NA | other | downstream | 2343855 | 2836167 ~ 2839421 (+) |
| CI01000006_03734862_03735227 | BANF1, BANF1.S, BANF1.L | other | downstream | 3236918 | 3734554 ~ 3736035 (+) |
| G41996 | NA | other | downstream | 4624894 | 5117206 ~ 5124149 (+) |
