G138058 (lrp8)


Basic Information

Item Value
gene id G138058
gene name lrp8
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 2765320 ~ 2768924 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU186795
ACCTCCTCAGAGCTTCATCTCTCAGAGCTTTCATGAGCTTTACTGAGATTATAGAGAAACAGGAGacgtgtgagagaaagagagagagagagacagacaggagacGAGACTGGTTTCAAACGCAGTTTATAACAACACACAGCGGGAGACATTTTACCAACATTTCATATAAATGCAAAGAACTCCTGCGCAGCTGCTGAGTGGAGAAACTAAAGCAAACAAGGCACAAAACAAACCGTGATAAAATAACGCAGAACGCAGTGAGATATTCAGAACACGCGGTGATGAGAACCAAAACagaaacactaaaaacactttGGCAGAAGATAAattcttcattttattattttatacaaataaattaatccaTGATCAACAGTGTCGTCTAAAATCTTATGTACATCCTTTTTACATTGGAGTGTATCAAAAAGTATTCGTATGAAAACGTATCTACAaacttcacaaacacacacacacacacacacactctctctcatacacacacagcgtTCCATCTCCCTGAGACAATACCGCACACTTCTCTCCACGCATGAGGTACACACGTTTGTGTTGTTATTGTTTCCCATAAACTGGGTAAATTAGTACCTGGAACTTTCCATTAACAAACGAGAAGAGTGGTTGAAGCAGAGCTGCCAACTCTGAGATTACACTGTTTCTAAAAATCACCTGACTTACACTTTCTAGTCTTCagtatgtgtgtatctgtggACATTAAACCATGAAAAGGTCCCCAGaagatgctttaaaaataattactgtattttttgcacttaaaggtgcacttaaaatcctttaattctcccaaaaatcaacagtgcatcttataatccggtgctccttatgtatacattctaccagtcagatgttaaggagcagtaaagcatttgctgaagtacagcgttataaggaTAAGTTTTCaattaagtttctccagcaatagcattagctgctaaccatagcgctagctctttctctgcTATGTCGGACTGTAGTCTGGAATTCAGCACACATAAAATCACCGGTTTGAGGTCAGTAAGCAAAActagaattcatatataaggtacactgtcgatttttgagaaaaagaaaggattttaggtgcgccttatattccgaaaaatacggtacttacAGTCTACTTACAATATGCCAGCACATTTTTAGTAGAAGAAGAGTCAtgaatttgtgattttttttttgggggacGGTTTGTCCCTTCCCTCTATCCTTCACGAAGGTTGGCGAGAGAACTGCATGTGAATGATATTTTGAGAGTGTCAAACTCTCAGATTGTTGGAAGAGCTGGCAACCCTGGATCAAACTCTCTTCTGTCCAAAAACCTTCACCGACTCTAACGTGAAGCTAATGAGACACAGTGCTATTCAGCTCCCTCGAACACCTTCTGCTTAGGTCTGGACGTACCACATGGCGAGAGGTGGTGAGagaatgtgtaaaacaaaaaaaagaacaaaaaaagaaaagacatcCAGTTTCACCAGTGTTTCACCTTTTTCACCAGTGTTTCAAGTACACAAGTACACGTTCACAACCGATGACGTGatagaaggaaggaaggaaggaagtgaGTGGCTTTAGATCCAGAAACAGAGATCAGAGAATCTCACACTCACTGACACACTCAGAcactcattaacactgaccaCGGATTGTCCCACGAACTAAGGTGCTGCTCCCAGTTCGGCTTCCCGCCTGAAGAGCCACGGCTCTGCGGACGAAGAggggaagaaataaaaaaggaaagaaagaagatgCTGAAGACCTCGGCATACTTCATGCGGAGACGGGGTTCGCGTGGCTTCAGGGCAGAACAATGTGATGTCATTGCGTACAAAAAGAACAGCCGTTGACGTTGAAAAGACGTCGCAAAAAACTTTGTCGTGCACATGAAAGCTGTGCGAACTCCATGGCCGAAGACATTACACGACAACGCCTGTGATTGGTCAATAAAAAAAGAGGCGTGCGAGAAAGCTTGTGAAAGCCCGCTCAAATTCGTGCAAAGCTCACGAACTTCGTTTCGCTGGAAGTATGCAGAGGCCTTGAGAAGATCTGAGGAGGAGGTTGGAGGAATGGCTGCAGGAGTTGCTGATGTAGACATTGTTCTTGGTGCTGATCTTTACGGCCACTACCGCTAGTTTAATCAGTGAAATGACCACAGTAATGCGACTCAACCCGGACTGAACTGGACTGAACCGGATTGAACCGGACTGAACCGGACGTCGTTCCTCATGTTTATGGTCAGACACAATAAGCGAGACGTGCCGCTAGGATCAATCTGCTCTGCCGTGTCTCAGCACTTCAGGCTAAACCGTCACTCTGCTGTTGTTTCGTAGCGTCCGTAACTCGTAACTTGTCCACTCGTGTCCTCACTTCGTACCGGTGGACATGGTGGGCTGCTCGGCGTACCAGTGCGTCGCAGGGTCCGGCATGCCGCTCCCCAGAGGCAGGGCGATGAAGGGCGCCCCCGCACTCATGCCGCCCACCCCGCCCACTCCCACCACGGGCACCGGATacgggtggtggtggtgatggtgggggCCGGGCAGACCCTCCGTGGTCCTCCCGATGTGGATCTCGTCCTCCTCGGCGTCGCCGGTGGTCTTGCGGTACACCGGGTTGTCGAAGTTCATGCTCTTGGTGCTCCTCCGCCTCCAGTTGCGGTAGACCAGGTAGACGGCAGTGCACAGCAGCCCCAGCACCACTGTGGCAACGATAGG

Function

symbol description
lrp8 Predicted to enable calcium ion binding activity. Predicted to act upstream of or within endocytosis. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in several structures, including axial hypoblast; brain; immature eye; neural tube; and neurons. Human ortholog(s) of this gene implicated in Alzheimer's disease; coronary artery disease; dementia; myocardial infarction; and schizophrenia. Orthologous to human LRP8 (LDL receptor related protein 8).

NR:

description
PREDICTED: low-density lipoprotein receptor-related protein 8 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU186795 True 2756 lncRNA 0.46 2 2765320 2768924

Neighbor

gene id symbol gene type direction distance location
LOC103044744 NA coding upstream 1976 2747818 ~ 2763344 (+)
LOC103044144 LOC108430743 coding upstream 53604 2689286 ~ 2711716 (+)
LOC103044323 LOC108430700 coding upstream 171629 2589517 ~ 2593691 (+)
LOC111194265 NA coding upstream 201273 2562135 ~ 2564047 (+)
cmpk1 cmpk1,cmpk,LOC107719256,LOC107681787,LOC107671754,LOC107709354,LOC107559368 coding upstream 235157 2522508 ~ 2530163 (+)
LOC111194192 NA coding downstream 151795 2920719 ~ 2922118 (+)
slc1a7 slc1a7,slc1a7a,LOC107722044,LOC107671767,LOC107681716,LOC107593788 coding downstream 174212 2943136 ~ 2978445 (+)
aldh9a1 aldh9a1,LOC108430735,LOC108267615,LOC107681718,LOC107593789,LOC105891333 coding downstream 248656 3017580 ~ 3025513 (+)
LOC103024543 fzr1b,LOC108430732,LOC108268046,LOC107719268,LOC107701330,LOC107722096 coding downstream 269495 3038419 ~ 3049776 (+)
LOC103024237 NA coding downstream 295003 3063927 ~ 3069951 (+)
G138030 NA non-coding upstream 16068 2680119 ~ 2749252 (+)
G138045 NA non-coding upstream 24553 2709396 ~ 2740767 (+)
G138043 NA non-coding upstream 32302 2656202 ~ 2733018 (+)
G138029 NA non-coding upstream 51862 2654976 ~ 2713458 (+)
G138026 NA non-coding upstream 156278 2607980 ~ 2609042 (+)
G138073 NA non-coding downstream 78633 2847557 ~ 2849112 (+)
G138074 NA non-coding downstream 94038 2862962 ~ 2863288 (+)
G138078 NA non-coding downstream 123719 2892643 ~ 2895410 (+)
G138080 NA non-coding downstream 128606 2897530 ~ 2899531 (+)
G138092 NA non-coding downstream 227630 2996554 ~ 2997077 (+)
G137929 NA other upstream 740934 2022755 ~ 2024386 (+)
LOC103042893 vps4b,LOC107727524,LOC107681797,LOC107710065 other upstream 914007 1835477 ~ 1851313 (+)
G137826 LOC108430781,LOC108267757 other upstream 1265364 1491816 ~ 1499956 (+)
mrps14 mrps14 other upstream 1725350 1037861 ~ 1039970 (+)
G137756 kiaa0040 other upstream 1776682 980980 ~ 988638 (+)
LOC103045052 cfap57,LOC106594647 other downstream 131551 2900475 ~ 2936129 (+)
LOC103024858 NA other downstream 313132 3082056 ~ 3084865 (+)
LOC103026108 selenot,selt1a,LOC107681817,LOC107708642 other downstream 346496 3115420 ~ 3119488 (+)
LOC103047488 pls1,LOC108437523,LOC107722705,LOC107656864,LOC107565818,LOC107599860,LOC107709028,LOC107681752 other downstream 1032929 3801853 ~ 3839372 (+)
G138701 NA other downstream 1064331 3833255 ~ 3834460 (+)

Expression


Co-expression Network