Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC103045052 |
| gene name | cfap57,LOC106594647 |
| gene type | misc |
| species | mexican tetra (Astyanax mexicanus) |
| category of species | ornamental fish |
| Item | Value |
|---|---|
| chromosome id | NC_035912.1 |
| NCBI id | CM008315.1 |
| chromosome length | 41032606 |
| location | 2900475 ~ 2936129 (+) |
| genome version | Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome |
| symbol | description |
|---|---|
| cfap57 | Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human CFAP57 (cilia and flagella associated protein 57). |
| description |
|---|
| PREDICTED: cilia- and flagella-associated protein 57 |
| id | description |
|---|---|
| K24729 | CFAP57, WDR65; cilia- and flagella-associated protein 57 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU186823 | False | 281 | lncRNA | 0.47 | 2 | 2918488 | 2936129 |
| XM_022677818.1 | True | 3884 | mRNA | 0.51 | 24 | 2900475 | 2918760 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC103044744 | NA | coding | upstream | 137131 | 2747818 ~ 2763344 (+) |
| LOC103044144 | LOC108430743 | coding | upstream | 188759 | 2689286 ~ 2711716 (+) |
| LOC103044323 | LOC108430700 | coding | upstream | 306784 | 2589517 ~ 2593691 (+) |
| LOC111194265 | NA | coding | upstream | 336428 | 2562135 ~ 2564047 (+) |
| cmpk1 | cmpk1,cmpk,LOC107719256,LOC107681787,LOC107671754,LOC107709354,LOC107559368 | coding | upstream | 370312 | 2522508 ~ 2530163 (+) |
| slc1a7 | slc1a7,slc1a7a,LOC107722044,LOC107671767,LOC107681716,LOC107593788 | coding | downstream | 7007 | 2943136 ~ 2978445 (+) |
| aldh9a1 | aldh9a1,LOC108430735,LOC108267615,LOC107681718,LOC107593789,LOC105891333 | coding | downstream | 81451 | 3017580 ~ 3025513 (+) |
| LOC103024543 | fzr1b,LOC108430732,LOC108268046,LOC107719268,LOC107701330,LOC107722096 | coding | downstream | 102290 | 3038419 ~ 3049776 (+) |
| LOC103024237 | NA | coding | downstream | 127798 | 3063927 ~ 3069951 (+) |
| LOC103045957 | LOC103045957,LOC108430690 | coding | downstream | 169317 | 3105446 ~ 3108504 (+) |
| G138080 | NA | non-coding | upstream | 944 | 2897530 ~ 2899531 (+) |
| G138078 | NA | non-coding | upstream | 5065 | 2892643 ~ 2895410 (+) |
| G138074 | NA | non-coding | upstream | 37187 | 2862962 ~ 2863288 (+) |
| G138073 | NA | non-coding | upstream | 51363 | 2847557 ~ 2849112 (+) |
| G138058 | lrp8 | non-coding | upstream | 131551 | 2765320 ~ 2768924 (+) |
| G138092 | NA | non-coding | downstream | 60425 | 2996554 ~ 2997077 (+) |
| G138123 | NA | non-coding | downstream | 174273 | 3110402 ~ 3114615 (+) |
| G138524 | gipc2,LOC108430720 | non-coding | downstream | 220627 | 3156756 ~ 3175364 (+) |
| G138534 | NA | non-coding | downstream | 320772 | 3256901 ~ 3296382 (+) |
| G138598 | NA | non-coding | downstream | 556567 | 3492696 ~ 3494363 (+) |
| G137929 | NA | other | upstream | 876089 | 2022755 ~ 2024386 (+) |
| LOC103042893 | vps4b,LOC107727524,LOC107681797,LOC107710065 | other | upstream | 1049162 | 1835477 ~ 1851313 (+) |
| G137826 | LOC108430781,LOC108267757 | other | upstream | 1400519 | 1491816 ~ 1499956 (+) |
| mrps14 | mrps14 | other | upstream | 1860505 | 1037861 ~ 1039970 (+) |
| G137756 | kiaa0040 | other | upstream | 1911837 | 980980 ~ 988638 (+) |
| LOC103024858 | NA | other | downstream | 145927 | 3082056 ~ 3084865 (+) |
| LOC103026108 | selenot,selt1a,LOC107681817,LOC107708642 | other | downstream | 179291 | 3115420 ~ 3119488 (+) |
| LOC103047488 | pls1,LOC108437523,LOC107722705,LOC107656864,LOC107565818,LOC107599860,LOC107709028,LOC107681752 | other | downstream | 865724 | 3801853 ~ 3839372 (+) |
| G138701 | NA | other | downstream | 897126 | 3833255 ~ 3834460 (+) |
| LOC111194271 | NA | other | downstream | 1159868 | 4095997 ~ 4102241 (+) |
