G40852


Basic Information

Item Value
gene id G40852
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 529128 ~ 551356 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU46383
TTTTAAAACATTTTAGAACACAGTTTATGACTTTAATAGTATTGTTGTAGTGTTTGTTCTGTTGCCAGAACGATTGTTGTTTGTAATGGATTATAAGATAATGAACAGGTAAGACTTTAAAACAGTTTCAACTGAAATCAATATTTCATGTCCGCATAATTATTTATTTGGTAAAAAGCAGTGTAACAAGTGGTATGACTGTACATTATCCCTTAAATGTTCGTCTTGTTCGAACCTGTCCGTTTGTCTTGGCTCAAAGCCGCTTGCTAGGAACTATTTTTCCTTCGCGCAAGCTTTCAGTTGAGAAAATATCATTATCTTACGTTCTTATGTGAAAAACAGCTAACAAATTTCTTATGTTTAATTGCAAAATGAGTGAATGTTAAGGTGTAAATCTAGTAAAATTCCAATATGAAAATCTTCATATATTAAATAACCATGTTTTTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU46383 True 447 lncRNA 0.30 2 529128 551356

Neighbor

gene id symbol gene type direction distance location
CI01000006_00502041_00503898 NA coding upstream 24822 502041 ~ 504306 (+)
CI01000006_00423835_00428157 NA coding upstream 100759 423093 ~ 428369 (+)
CI01000006_00418370_00420217 SPAG16 coding upstream 108811 418370 ~ 420317 (+)
CI01000006_00363989_00372189 NA coding upstream 156864 363989 ~ 372264 (+)
CI01000006_00315992_00319208 NA coding upstream 209742 315062 ~ 319386 (+)
CI01000006_00586425_00608567 NA coding downstream 34612 585968 ~ 609091 (+)
CI01000006_00612891_00618198 RBM22.S, RBM22 coding downstream 60631 611987 ~ 618372 (+)
CI01000006_00647015_00654423 NA coding downstream 95659 647015 ~ 655017 (+)
CI01000006_00666971_00667988 NA coding downstream 115437 666793 ~ 668405 (+)
CI01000006_00674724_00686031 NA coding downstream 122499 673855 ~ 686506 (+)
G40768 NA non-coding upstream 36816 488407 ~ 493026 (+)
G40767 NA non-coding upstream 44943 360009 ~ 484185 (+)
G40811 NA non-coding upstream 175165 353720 ~ 353963 (+)
G40800 NA non-coding upstream 223862 305007 ~ 305266 (+)
G40799 NA non-coding upstream 225901 303015 ~ 303227 (+)
G40904 NA non-coding downstream 75377 626733 ~ 630432 (+)
G40935 NA non-coding downstream 163548 714904 ~ 715650 (+)
G40925 NA non-coding downstream 172465 723821 ~ 786328 (+)
G40919 NA non-coding downstream 353429 904785 ~ 906069 (+)
G40772 NA other upstream 49934 475465 ~ 479194 (+)
G41170 NA other downstream 1140709 1692065 ~ 1695821 (+)
G41424 NA other downstream 2094306 2645662 ~ 2660570 (+)
G41591 NA other downstream 2284811 2836167 ~ 2839421 (+)
CI01000006_03734862_03735227 BANF1, BANF1.S, BANF1.L other downstream 3177874 3734554 ~ 3736035 (+)
G41996 NA other downstream 4565850 5117206 ~ 5124149 (+)

Expression


Co-expression Network