LOC103026108 (selenot,selt1a,LOC107681817,LOC107708642)


Basic Information

Item Value
gene id LOC103026108
gene name selenot,selt1a,LOC107681817,LOC107708642
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 3115420 ~ 3119488 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU186879
AGGTTCCCGGATGCTGTGCGTTAAGCGGACGGACTGCGGTAAGAATGCGTTGGTTAGCGCTGTCGGTTCTTGCGGTGTGGCTTTGCGCGTTTTCCAGCGCTGCCGGAGAGAGCACGGGAGTTAAAAAGATGAAGATGCAGTTCGCCACCGGGCCACTTCTCAAATTCCAGATCTGTATCTCCTGAGGGTACAAGCGGGTGTTTGAGGAGTACACGCAGGCTCTGTACCAGCGGTACCCAGACATCCGCATTGAGGGAGAGAACTATCTTCCTCTGCCTGTTTACAGGTATATTGCTTCCTttctgtctattttcaaactgctgctgattggaGTGATTGTTGTGGGGAAGGACCCATTCGCTCTCTTCGGTATGCAAGCACCAGGACTTTGGGTTTGGAGTCAAGAAAATAAGATATATGCCTGTATGATGGTGTTCTTCTTCAGCAATATGATTGAAAACCAGTGCATGTCTACAGGTGCTTTTGAAATCACGCTCAATGATGTTCCGGTGTGGTCCAAGCTGGAGTCCGGTCACCTGCCTTCCATGCAGCAGCTGGTGCAGATCCTGGAGAATGAAATGAAGCTGAATGTGCACATGGACAGACTTCCACACCATCACTCCTAACCCTGCCTCCACCCCACCTCCTGGAGTCTTGGACCCTCCATGTTTGAGGTGGGGCTCTCCTTCTACGGTTGCGAGGCGACATTTATGAAGGTCTGTGCTGAAAGTAGAGGATCTACTAGCGCAGGCTGGATGTCCTGCTCGTTTCTCGCCATGCCCCTCTGGAGATGCCCCGCCCACAGATACTGGCTTGGGGTCCATGGCAACAGTGGTGGCTGTTCATTACTACTGAAGCCCATAAGCTGTGCAATAACCATTCAGTTCAGGATTAACATATGAATCAGGGGAGTCTGCACTAATGAGTGTGTTTAGGTTGTGGTGAGCTCCTTCCAGCATTGCTGCCACTGAGGGGATCCAGCAGAgtctcttcctttcttccttttaAATTCCATTACATGTCTAAAACATGGTCTTTGCATTGTTTATCAATAGATAGATGTTCTAACTTATTGCCCTAAATGACCCAATCATGGCTATTTAACGTGAGACAGAGTGCTGGTTATTTTATTGATCCTGCTGTacttttgtatttgtttctaTAGCCAACCATGTTAACtcaaaatgataataaaattaatattctaAC
>XM_007250660.3
TCAAGGCTTTAAACCTCGGCGCAGGTTCCCGGATGCTGTGCGTTAAGCGGACGGACTGCGGTAAGAATGCGTTGGTTAGCGCTGTCGGTTCTTGCGGTGTGGCTTTGCGCGTTTTCCAGCGCTGCCGGAGAGAGCACGGGAGTTAAAAAGATGAAGATGCAGTTCGCCACCGGGCCACTTCTCAAATTCCAGATCTGTATCTCCTGAGGGTACAAGCGGGTGTTTGAGGAGTACACGCAGGCTCTGTACCAGCGGTACCCAGACATCCGCATTGAGGGAGAGAACTATCTTCCTCTGCCTGTTTACAGGTATATTGCTTCCTttctgtctattttcaaactgctgctgattggaGTGATTGTTGTGGGGAAGGACCCATTCGCTCTCTTCGGTATGCAAGCACCAGGACTTTGGGTTTGGAGTCAAGAAAATAAGATATATGCCTGTATGATGGTGTTCTTCTTCAGCAATATGATTGAAAACCAGTGCATGTCTACAGGTGCTTTTGAAATCACGCTCAATGATGTTCCGGTGTGGTCCAAGCTGGAGTCCGGTCACCTGCCTTCCATGCAGCAGCTGGTGCAGATCCTGGAGAATGAAATGAAGCTGAATGTGCACATGGACAGACTTCCACACCATCACTCCTAACCCTGCCTCCACCCCACCTCCTGGAGTCTTGGACCCTCCATGTTTGAGGTGGGGCTCTCCTTCTACGGTTGCGAGGCGACATTTATGAAGGTCTGTGCTGAAAGTAGAGGATCTACTAGCGCAGGCTGGATGTCCTGCTCGTTTCTCGCCATGCCCCTCTGGAGATGCCCCGCCCACAGATACTGGCTTGGGGTCCATGGCAACAGTGGTGGCTGTTCATTACTACTGAAGCCCATAAGCTGTGCAATAACCATTCAGTTCAGGATTAACATATGAATCAGGGGAGTCTGCACTAATGAGTGTGTTTAGGTTGTGGTGAGCTCCTTCCAGCATTGCTGCCACTGAGGGGATCCAGCAGAgtctcttcctttcttccttttaAATTCCATTACATGTCTAAAACATGGTCTTTGCATTGTTTATCAATAGATAGATGTTCTAACTTATTGCCCTAAATGACCCAATCATGGCTATTTAACGTGAGACAGAGTGCTGGTTATTTTATTGATCCTGCTGTacttttgtatttgtttctaTAGCCAACCATGTTAACtcaaaatgataataaaattaatattctaACAAAAA

Function

symbol description
selenot Predicted to enable thioredoxin-disulfide reductase activity. Involved in cell redox homeostasis. Predicted to be located in endoplasmic reticulum. Predicted to be active in endoplasmic reticulum membrane.

NR:

description
PREDICTED: selenoprotein T

GO: NA

KEGG:

id description
K22366 SELENOT; thioredoxin reductase-like selenoprotein T

RNA

RNA id representative length rna type GC content exon number start site end site
TU186879 False 1209 lncRNA 0.48 6 3115442 3119483
XM_007250660.3 True 1236 mRNA 0.48 6 3115420 3119488

Neighbor

gene id symbol gene type direction distance location
LOC103045957 LOC103045957,LOC108430690 coding upstream 6916 3105446 ~ 3108504 (+)
LOC103024237 NA coding upstream 45469 3063927 ~ 3069951 (+)
LOC103024543 fzr1b,LOC108430732,LOC108268046,LOC107719268,LOC107701330,LOC107722096 coding upstream 65644 3038419 ~ 3049776 (+)
aldh9a1 aldh9a1,LOC108430735,LOC108267615,LOC107681718,LOC107593789,LOC105891333 coding upstream 89907 3017580 ~ 3025513 (+)
slc1a7 slc1a7,slc1a7a,LOC107722044,LOC107671767,LOC107681716,LOC107593788 coding upstream 136975 2943136 ~ 2978445 (+)
LOC103026425 zgc:153615,LOC103026425,LOC108430722,LOC107691014,LOC107747506,LOC107599852,LOC107708656,LOC107681829 coding downstream 8257 3127745 ~ 3142947 (+)
LOC107197652 NA coding downstream 27759 3147247 ~ 3149780 (+)
txndc12 txndc12,LOC107690994,LOC107566463,LOC107708672 coding downstream 31388 3150876 ~ 3156054 (+)
LOC103046575 LOC108430689 coding downstream 68244 3187732 ~ 3193555 (+)
cope cope,LOC107690966 coding downstream 75060 3194548 ~ 3200085 (+)
G138123 NA non-coding upstream 805 3110402 ~ 3114615 (+)
G138092 NA non-coding upstream 118343 2996554 ~ 2997077 (+)
G138080 NA non-coding upstream 215889 2897530 ~ 2899531 (+)
G138078 NA non-coding upstream 220010 2892643 ~ 2895410 (+)
G138074 NA non-coding upstream 252132 2862962 ~ 2863288 (+)
G138524 gipc2,LOC108430720 non-coding downstream 37268 3156756 ~ 3175364 (+)
G138534 NA non-coding downstream 137413 3256901 ~ 3296382 (+)
G138598 NA non-coding downstream 373208 3492696 ~ 3494363 (+)
G138593 NA non-coding downstream 385088 3504576 ~ 3506945 (+)
G138609 NA non-coding downstream 405143 3524631 ~ 3526308 (+)
LOC103024858 NA other upstream 30555 3082056 ~ 3084865 (+)
LOC103045052 cfap57,LOC106594647 other upstream 179291 2900475 ~ 2936129 (+)
G137929 NA other upstream 1091034 2022755 ~ 2024386 (+)
LOC103042893 vps4b,LOC107727524,LOC107681797,LOC107710065 other upstream 1264107 1835477 ~ 1851313 (+)
G137826 LOC108430781,LOC108267757 other upstream 1615464 1491816 ~ 1499956 (+)
LOC103047488 pls1,LOC108437523,LOC107722705,LOC107656864,LOC107565818,LOC107599860,LOC107709028,LOC107681752 other downstream 682365 3801853 ~ 3839372 (+)
G138701 NA other downstream 713767 3833255 ~ 3834460 (+)
LOC111194271 NA other downstream 976509 4095997 ~ 4102241 (+)
LOC103023077 NA other downstream 1046455 4165943 ~ 4172010 (+)
G138839 NA other downstream 1118121 4237609 ~ 4245864 (+)

Expression


Co-expression Network