G138672 (LOC105889432,LOC108437525,LOC108268022,LOC107722302,LOC107565821)


Basic Information

Item Value
gene id G138672
gene name LOC105889432,LOC108437525,LOC108268022,LOC107722302,LOC107565821
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 3732030 ~ 3733460 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU187668
TCTGCTTTATCAGCCTCTTATCCGCCACGATGACGTTCTCCGCGTCCACCACGATCACCTTCCCGTCTCGAGGCCCCACGGCGAAGTTATCGAAGCTGACGTCCAGCAGGTACAGGGCGAAGTCGAAGTCGTTGTTGGTGAGCTGCTCGGCGATGTCCATCAGCTGCTTGGCCAGATCCACTCTCTTCTCCCACGGTGCGTTATAGAAGCTCCACAGCTCCTCACCAACATAGTTCACCGCCACCATGCGCCCGCACGCACCCAGGTACTTCGCAAACGGCCAGCCCTCGTCTGAGGGG

Function

NR:

description
PREDICTED: deleted in autism protein 1 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU187668 True 299 lncRNA 0.60 2 3732030 3733460

Neighbor

gene id symbol gene type direction distance location
LOC103030773 LOC103030773,LOC108437505,LOC108267627,LOC107558181 coding upstream 133428 3585149 ~ 3598602 (+)
LOC103030036 LOC103030036,LOC108437507,LOC107681832,LOC107709017 coding upstream 150904 3571143 ~ 3581126 (+)
fubp1 fubp1 coding upstream 163352 3554929 ~ 3568678 (+)
miga1 miga1,LOC107558173 coding upstream 179475 3536417 ~ 3552555 (+)
ak5 ak5,LOC107703241,LOC107599844,LOC107681791 coding upstream 254469 3417426 ~ 3477561 (+)
LOC103031935 ephb3a,LOC108437521,LOC108267069,LOC107656865,LOC107599837,LOC107681809,LOC107708817,LOC105889460 coding downstream 167694 3901154 ~ 3942480 (+)
LOC103021527 NA coding downstream 262482 3995942 ~ 4002916 (+)
LOC103032574 tbl1xr1b,LOC103032574,LOC108437519,LOC107656866,LOC108267995,LOC107568629,LOC106530177,LOC108238308,LOC100706341 coding downstream 288976 4022436 ~ 4046639 (+)
LOC103033521 b3gnt5 coding downstream 319270 4052730 ~ 4065474 (+)
dcun1d1 dcun1d1,LOC103032878,LOC107568628,LOC105889496,LOC107722250,LOC107681826 coding downstream 342028 4075488 ~ 4080104 (+)
G138665 NA non-coding upstream 50100 3681726 ~ 3681930 (+)
G138663 NA non-coding upstream 62454 3669362 ~ 3669576 (+)
G138661 NA non-coding upstream 68022 3663776 ~ 3664008 (+)
G138658 NA non-coding upstream 120628 3611193 ~ 3611402 (+)
G138647 NA non-coding upstream 129837 3601855 ~ 3602193 (+)
G138731 NA non-coding downstream 148091 3881551 ~ 3907123 (+)
G138744 NA non-coding downstream 302911 4036371 ~ 4039858 (+)
G138747 NA non-coding downstream 335327 4068787 ~ 4072088 (+)
G138758 NA non-coding downstream 371520 4104980 ~ 4114118 (+)
G138748 NA non-coding downstream 439311 4172771 ~ 4175585 (+)
LOC103026108 selenot,selt1a,LOC107681817,LOC107708642 other upstream 612542 3115420 ~ 3119488 (+)
LOC103024858 NA other upstream 647165 3082056 ~ 3084865 (+)
LOC103045052 cfap57,LOC106594647 other upstream 795901 2900475 ~ 2936129 (+)
G137929 NA other upstream 1707644 2022755 ~ 2024386 (+)
LOC103042893 vps4b,LOC107727524,LOC107681797,LOC107710065 other upstream 1880717 1835477 ~ 1851313 (+)
LOC103047488 pls1,LOC108437523,LOC107722705,LOC107656864,LOC107565818,LOC107599860,LOC107709028,LOC107681752 other downstream 68393 3801853 ~ 3839372 (+)
G138701 NA other downstream 99795 3833255 ~ 3834460 (+)
LOC111194271 NA other downstream 362537 4095997 ~ 4102241 (+)
LOC103023077 NA other downstream 432483 4165943 ~ 4172010 (+)
G138839 NA other downstream 504149 4237609 ~ 4245864 (+)

Expression


Co-expression Network