G138701


Basic Information

Item Value
gene id G138701
gene name NA
gene type unknown
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 3833255 ~ 3834460 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU187722
TGACATCACAGCATTTGGAACTTTGGAGGTGAATAAGATCCTGAGTTTGAACTCTAGTGATCAGTTCTGCTTGCACCTGCGACTGaactgcactgagagagagacacacctgcactgagagagagagacacctgcactgagagagagagagacacctgcactgagagagagagacacctgcactgagagagagagacacctgcactgagagagagagagacacctgcactgagaAAGAGACACTTatccagagagacagagaccgAGAGAGGGTCCGAGACAGAGACCGAGACAGAGTCTGAGAGTTTATCCATCTACTCCACTtattCCAGAGatctggagagagagatgggggagTTAATGAGCGAGAGCGAGGTCCAGCAGACCATTCTTCTGATCCAGAAGATTGAGAGTGAAAAAAGAGACCGAATCCTGAAGGCCTGGACTGTGGCCAGTAACGAATGgctggaggagaagaagaagatgaagcaGGAGATCGAACTGCTGAAGCAGGAAGCAGGGAGGCtgaggatgatgaagaagaaggaTGGAGAGATAAACGACCTCAATGAAATGAGGAAGCTCCACCAATCAGAGCTGGATCTGCttcagaagaaagagaaagacaggagAGACAGAATCCTGAAGTCCTGGACTGATGAGAGTAACAAATGGGACTCGGAGAAAAGAAAGATGAGGCAGGAGATCGCCCAGctgaaagaaggagagaagctGAGAGCGATGAAGAGGAAGGATGAAGAGCAGGTGGGAGAGATGAAGGAgctggagaaaatgagagagctCCACCAGAAAGAGATAGAACTGCTCCGAAAAACGGATAACGAAAGAAGAGACAGAGTCCGAGAGTCCTGGCTGAAACTCTGCTCTGAATGGAAGGAGGAGAAACAGCAGATGAAGCTggaggaggaaaaaagagagcgtCTCCTGGAGTCCTGCATGAAGGAGAAAGAAGAATGGAAGGAAAAGATGGAGACGAtgatgaaagaaagagagaagga
>TU187723
TGACATCACAGCATTTGGAACTTTGGAGGTGAATAAGATCCTGAGTTTGAACTCTAGTGATCAGTTCTGCTTGCACCTGCGACTGaactgcactgagagagagacacacctgcactgagagagagagacacctgcactgagaAAGAGACACTTatccagagagacagagaccgAGAGAGGGTCCGAGACAGAGACCGAGACAGAGTCTGAGAGTTTATCCATCTACTCCACTtattCCAGAGatctggagagagagatgggggagTTAATGAGCGAGAGCGAGGTCCAGCAGACCATTCTTCTGATCCAGAAGATTGAGAGTGAAAAAAGAGACCGAATCCTGAAGGCCTGGACTGTGGCCAGTAACGAATGgctggaggagaagaagaagatgaagcaGGAGATCGAACTGCTGAAGCAGGAAGCAGGGAGGCtgaggatgatgaagaagaaggaTGGAGAGATAAACGACCTCAATGAAATGAGGAAGCTCCACCAATCAGAGCTGGATCTGCttcagaagaaagagaaagacaggagAGACAGAATCCTGAAGTCCTGGACTGATGAGAGTAACAAATGGGACTCGGAGAAAAGAAAGATGAGGCAGGAGATCGCCCAGctgaaagaaggagagaagctGAGAGCGATGAAGAGGAAGGATGAAGAGCAGGTGGGAGAGATGAAGGAgctggagaaaatgagagagctCCACCAGAAAGAGATAGAACTGCTCCGAAAAACGGATAACGAAAGAAGAGACAGAGTCCGAGAGTCCTGGCTGAAACTCTGCTCTGAATGGAAGGAGGAGAAACAGCAGATGAAGCTggaggaggaaaaaagagagcgtCTCCTGGAGTCCTGCATGAAGGAGAAAGAAGAATGGAAGGAAAAGATGGAGACGAtgatgaaagaaagagagaagga

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU187722 True 1019 TUCP 0.49 2 3833255 3834460
TU187723 False 927 TUCP 0.48 3 3833255 3834460

Neighbor

gene id symbol gene type direction distance location
LOC103030773 LOC103030773,LOC108437505,LOC108267627,LOC107558181 coding upstream 234653 3585149 ~ 3598602 (+)
LOC103030036 LOC103030036,LOC108437507,LOC107681832,LOC107709017 coding upstream 252129 3571143 ~ 3581126 (+)
fubp1 fubp1 coding upstream 264577 3554929 ~ 3568678 (+)
miga1 miga1,LOC107558173 coding upstream 280700 3536417 ~ 3552555 (+)
ak5 ak5,LOC107703241,LOC107599844,LOC107681791 coding upstream 355694 3417426 ~ 3477561 (+)
LOC103031935 ephb3a,LOC108437521,LOC108267069,LOC107656865,LOC107599837,LOC107681809,LOC107708817,LOC105889460 coding downstream 66694 3901154 ~ 3942480 (+)
LOC103021527 NA coding downstream 161482 3995942 ~ 4002916 (+)
LOC103032574 tbl1xr1b,LOC103032574,LOC108437519,LOC107656866,LOC108267995,LOC107568629,LOC106530177,LOC108238308,LOC100706341 coding downstream 187976 4022436 ~ 4046639 (+)
LOC103033521 b3gnt5 coding downstream 218270 4052730 ~ 4065474 (+)
dcun1d1 dcun1d1,LOC103032878,LOC107568628,LOC105889496,LOC107722250,LOC107681826 coding downstream 241028 4075488 ~ 4080104 (+)
G138671 NA non-coding upstream 79845 3720938 ~ 3753410 (+)
G138672 LOC105889432,LOC108437525,LOC108268022,LOC107722302,LOC107565821 non-coding upstream 99795 3732030 ~ 3733460 (+)
G138665 NA non-coding upstream 151325 3681726 ~ 3681930 (+)
G138663 NA non-coding upstream 163679 3669362 ~ 3669576 (+)
G138661 NA non-coding upstream 169247 3663776 ~ 3664008 (+)
G138731 NA non-coding downstream 47091 3881551 ~ 3907123 (+)
G138744 NA non-coding downstream 201911 4036371 ~ 4039858 (+)
G138747 NA non-coding downstream 234327 4068787 ~ 4072088 (+)
G138758 NA non-coding downstream 270520 4104980 ~ 4114118 (+)
G138748 NA non-coding downstream 338311 4172771 ~ 4175585 (+)
LOC103026108 selenot,selt1a,LOC107681817,LOC107708642 other upstream 713767 3115420 ~ 3119488 (+)
LOC103024858 NA other upstream 748390 3082056 ~ 3084865 (+)
LOC103045052 cfap57,LOC106594647 other upstream 897126 2900475 ~ 2936129 (+)
G137929 NA other upstream 1808869 2022755 ~ 2024386 (+)
LOC103042893 vps4b,LOC107727524,LOC107681797,LOC107710065 other upstream 1981942 1835477 ~ 1851313 (+)
LOC111194271 NA other downstream 261537 4095997 ~ 4102241 (+)
LOC103023077 NA other downstream 331483 4165943 ~ 4172010 (+)
G138839 NA other downstream 403149 4237609 ~ 4245864 (+)
LOC103026815 LOC108428843 other downstream 838920 4673380 ~ 4722774 (+)
LOC103039271 LOC108428890,LOC108268340 other downstream 868886 4703346 ~ 4708663 (+)

Expression


Co-expression Network