LOC103047802 (pcolce2a,LOC108437522,LOC108268019)


Basic Information

Item Value
gene id LOC103047802
gene name pcolce2a,LOC108437522,LOC108268019
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 3847722 ~ 3861356 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU187750
TAATCTCAGCAGCCATGCGGGAGCAGAGCGTTCTCGCCACCTTCTCCATCACTAGTGTGTATAAAGAGGGAAACCTAGCCATCCAGCAGGCTGGGAAGACCATGAGCACCAAAATCACTGTCCTCTGCAAAAAGTGTCCACTGGTGAGGAGAGGTTTGAACTACATCGTGATGGGCCATGTCGACGAGCAGGGGCAAGGCGTTATTTCCCCGTACAACTTCATGATGGCTTTCAAAAATAAGCAGCACAGAGACCTGGCTGTGCTGACTAATGTTCACTGCTGATGGAGGGAAGTGGCTGAATTTGACTCCAACATATAACCTCTGAACTTTATATTTACCAAATCTGGAAGCTTTTGTAAGTATGAATGGTCACTCACATGAACCAACAGCCATGTCTGTGCAAGAGCTGCTTTTTGGAAATTGCTATAGAATTGATCATCgataatataaaatgttgtatttatatgtgcTATTATTTGATATAACATATCTGGAGGGCCTGGACTGGTCTGAtattaatTCTGTTATCTTCCAATATTCCATTCTTATTTTTGGAACATATTTGTTCCTTAAAACacttgtattatttaaaaaactaatagtTTGTGACTCAATTGTTCACACTAGCCCAACCTCCAATGACATTGGAACACAACAACCCTTGATTAATGGACTGTCCGAAAGCACACCGAGAGGTATTTTCCAGCTGTAGAGAAGAAAACAGATATTAcatcacattaaataaaatcattaaatctTTTATCAAGAACAAAAACTATTATAAAGCACAAATTTAAGAGGAAGGAAACACAACTCATAACACAGCCACAGTATGggcctttttatatatatctctATAAGGTGTGAGGTGTG
>XM_022677842.1
gtatctcTCCTCCACAGCTCTTCTCTCCCTCAGACTGAGAGCGGAGGGTGAAGTCGGGGCTCCGCTCTGTAACAGAGCCTCTATTCTCTCCGGCCTCTCCGGCTGCAGTCTGAGAGAAAACCCTCAGGAGATTCAGAGCTTCAGAGCTGCTCTTTTCCTGCAGGAGAAACACAGGTTCTGAATGTCGCGTTTCTTCAGACCCCGGGAACAATGTGGATTTTAGCGCTGAGCCTCTTCCTCCTGCTCCCCCTGGTTTCAGCAGAACCGCAGAGGAGAAGGTTAGTGTTTGAATGTGGCGGGAACTTTACAGGATATTCAGGGTTCATTGGGAGCAGCGGTCACCCCGGGGTTTACCCAGCTAACACCAAATGTGTCTGGAGGATCACGGTGCCTCAGGGCAGAGTGGTGTCCCTCCTGTTCCGTGTGATGGACCTGGAGAATGACGGGCTGTGCAGATACGATTACGTGGACGTGTATGAAGGACACGTCAGTGGCCAGAGGCTCGGCCGCTTCTGCGGTACGTCCAGGCCCGGCCCGCTGGTTACCAGTGGCAACAAGATGCAAGTGGTCATGGTGTCTGACGCCAACACAGCTGGGAGTGGTTTCCTGGCTGCGTACGCTGCAGTTCGACCCAACGAAGTAGGGAATCGTTATTGTGGTGGACTTCTGAAGAAGCCAGGAAGTTTGAAGACGCCAAATTGGCCAGACAAGGATTACCCAGCTGGTGTAACGTGCTCATGGCATATAGTGGCACCGCAGAACCAGATAATTGAGCTGACGTTTGAGAAGTTCGACGTGGAGAGAGACAACTACTGCCGCTATGATCACATGGCCGTTTACAACGGCGGGGAGACGAGCGACTCTCGGAGGATCGGCCGGTTCTGTGGAGACAGCCCTCCTGCCCCCATCCACTCTGAGGGCAGCCAGCTCTTCGTTCAGTTCGTGTCTGATCTCAGTCTGACCGCTGATGGGTTTATAGGACATTATCTGTTCAAACCTAAAAACTCCACCATAACAGGCTCTCCAGTCACCACAGCTCCAACCATTCCCACCACTGCATCACCCTTAGCTCTTACATATTCAGAAGCTCTCTGCAAGCAGAAATGCAGGAGGAGCGGAACCATCGAAAGCCATTACTGCTCAAGTAACTTCGGTAAAAAGGGTTTTTtgggttgtttttgttgtttttttgttaaagacATGCACAGCACCATAATCTCAGCAGCCATGCGGGAGCAGAGCGTTCTCGCCACCTTCTCCATCACTAGTGTGTATAAAGAGGGAAACCTAGCCATCCAGCAGGCTGGGAAGACCATGAGCACCAAAATCACTGTCCTCTGCAAAAAGTGTCCACTGGTGAGGAGAGGTTTGAACTACATCGTGATGGGCCATGTCGACGAGCAGGGGCAAGGCGTTATTTCCCCGTACAACTTCATGATGGCTTTCAAAAATAAGCAGCACAGAGACCTGGCTGTGCTGACTAATGTTCACTGCTGATGGAGGGAAGTGGCTGAATTTGACTCCAACATATAACCTCTGAACTTTATATTTACCAAATCTGGAAGCTTTTGTAAGTATGAATGGTCACTCACATGAACCAACAGCCATGTCTGTGCAAGAGCTGCTTTTTGGAAATTGCTATAGAATTGATCATCgataatataaaatgttgtatttatatgtgcTATTATTTGATATAACATATCTGGAGGGCCTGGACTGGTCTGAtattaatctgttttattttgtgttttttattaatttatttcagaaatgGGTCAGTTAATTATGCATTCTGTTATCTTCCAATATTCCATTCTTATTTTTGGAACATATTTGTTCCTTAAAACacttgtattatttaaaaaactaatagtTTGTGACTCAATTGTTCACACTAGCCCAACCTCCAATGACATTGGAACACAACAACCCTTGATTAATGGACTGTCCGAAAGCACACCGAGAGGTATTTTCCAGCTGTAGAGAAGAAAACAGATATTAcatcacattaaataaaatcattaaatctTTTATCAAGAACAAAAACTATTATAAAGCACAAATTTAAGAGGAAGGAAACACAACTCATAACACAGCCACAGTATGggcctttttatatatatctctATAAGGTGTGAGGTGTGAAaggctgaacactggtcagcatgctcatggcaaggctacGTGAACTATCCGAGTTTGAGCGAGGCAAGATAGTGTATATCAGATAGATTGGATATTCCATTTCTGTGCACATATATTTAGCATAACACAACCTGttataaaaggcattaccacccacagtggacagtgcagtggctgGTAATGATTATGACTGGCTTATATAATGATTATGTGGTTATAATTGTTCATTTTCTCTAATAGTCTTTTTAATAAACTCAGCAgttctcaactggtctca

Function

symbol description
pcolce2a Predicted to be located in extracellular region and membrane. Predicted to be integral component of membrane. Orthologous to human PCOLCE2 (procollagen C-endopeptidase enhancer 2).

NR:

description
PREDICTED: procollagen C-endopeptidase enhancer 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU187750 False 875 TUCP 0.39 3 3848000 3851682
XM_022677842.1 True 2425 mRNA 0.46 9 3847722 3861356

Neighbor

gene id symbol gene type direction distance location
LOC103031615 NA coding downstream 50928 3793328 ~ 3796794 (-)
LOC103031087 dia1a,LOC108437525,LOC107681802,LOC107599840,LOC107722302,LOC107565821,LOC108268022 coding downstream 87740 3722737 ~ 3759982 (-)
usp33 usp33,LOC107708728,LOC107751869 coding downstream 312317 3504576 ~ 3535405 (-)
zzz3 zzz3,LOC107558175,LOC104950552 coding downstream 343900 3479968 ~ 3503822 (-)
pigk pigk,LOC107751867,LOC107599845 coding downstream 431413 3381575 ~ 3416309 (-)
LOC103032259 si:ch211-38m6.6,LOC108437504,LOC107656858,LOC107722537,LOC107565819,LOC107681768,LOC108267997,LOC107599859 coding upstream 113454 3974810 ~ 3990263 (-)
LOC103021848 LOC103021848,LOC108437503 coding upstream 141469 4002825 ~ 4016139 (-)
eif4a2 eif4a2,LOC108267852,LOC107568626,LOC107593804,LOC105889495 coding upstream 207422 4068778 ~ 4074278 (-)
LOC111194272 LOC108437516,LOC108267691,LOC107715522,LOC107681815,LOC105889505 coding upstream 244198 4105554 ~ 4121993 (-)
ripk2 ripk2,LOC107681812,LOC107715521,LOC107722215,LOC107701343 coding upstream 267176 4128532 ~ 4142618 (-)
G138716 NA non-coding downstream 5942 3841399 ~ 3841780 (-)
G138706 NA non-coding downstream 16430 3830667 ~ 3831292 (-)
G138662 NA non-coding downstream 183714 3663776 ~ 3664008 (-)
G138659 NA non-coding downstream 231708 3615793 ~ 3616014 (-)
G138657 NA non-coding downstream 248212 3599263 ~ 3599510 (-)
G138794 NA non-coding upstream 79280 3940636 ~ 3942474 (-)
G138815 NA non-coding upstream 188811 4050167 ~ 4051231 (-)
G138817 dcun1d1,LOC107656862,LOC107568628,LOC107722250,LOC105889496,LOC103032878,LOC107681826,LOC107578399 non-coding upstream 214144 4075500 ~ 4077466 (-)
G138830 NA non-coding upstream 280112 4141468 ~ 4151135 (-)
G138834 NA non-coding upstream 300856 4162212 ~ 4162480 (-)
G138708 NA other downstream 14052 3832721 ~ 3833670 (-)
gipc2 gipc2,dnajb4,LOC108430720 other downstream 672369 3156750 ~ 3175353 (-)
LOC103025790 NA other downstream 733036 3095601 ~ 3114686 (-)
LOC103045355 LOC108430731 other downstream 784963 3050400 ~ 3062759 (-)
LOC103042176 zgc:55943,c7h1orf21,LOC103042176,LOC108430752,LOC107709356,LOC107671715,LOC107559369,LOC107593773,LOC107727521 other downstream 1360828 2477695 ~ 2486894 (-)
LOC103034146 zgc:110366,LOC108267892,LOC108437513,LOC105007548 other upstream 469515 4330871 ~ 4338197 (-)
G139074 NA other upstream 1414750 5276106 ~ 5276468 (-)
G139105 NA other upstream 1468722 5330078 ~ 5330805 (-)
G139489 NA other upstream 2147697 6009053 ~ 6010867 (-)
LOC111194281 NA other upstream 2161253 6022609 ~ 6054733 (-)

Expression


Co-expression Network